| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2032320004 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0059646 | Gp0051399 | Ga0026226 |
| Sample Name | Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 189275844 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 16 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum | 1 |
| All Organisms → cellular organisms → Bacteria | 7 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Face And Otc Sites In Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → wetland area → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Maryland Wetland Ecosystem, MD | |||||||
| Coordinates | Lat. (o) | 38.85 | Long. (o) | -76.53333 | Alt. (m) | N/A | Depth (m) | .01 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000708 | Metagenome / Metatranscriptome | 926 | Y |
| F003187 | Metagenome / Metatranscriptome | 502 | Y |
| F008318 | Metagenome / Metatranscriptome | 335 | Y |
| F013114 | Metagenome / Metatranscriptome | 274 | Y |
| F025511 | Metagenome / Metatranscriptome | 201 | Y |
| F031579 | Metagenome / Metatranscriptome | 182 | Y |
| F034932 | Metagenome / Metatranscriptome | 173 | Y |
| F036181 | Metagenome / Metatranscriptome | 170 | Y |
| F041174 | Metagenome / Metatranscriptome | 160 | Y |
| F045206 | Metagenome / Metatranscriptome | 153 | Y |
| F085675 | Metagenome / Metatranscriptome | 111 | Y |
| F086527 | Metagenome | 110 | Y |
| F090684 | Metagenome / Metatranscriptome | 108 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| FACEMD_FWMYIUC02F478C | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 503 | Open in IMG/M |
| FACEMD_FWMYIUC02F73QI | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum | 525 | Open in IMG/M |
| FACEMD_FWMYIUC02FMUDL | All Organisms → cellular organisms → Bacteria | 508 | Open in IMG/M |
| FACEMD_FWMYIUC02G5VGS | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 529 | Open in IMG/M |
| FACEMD_FWMYIUC02GDDHM | All Organisms → cellular organisms → Bacteria | 513 | Open in IMG/M |
| FACEMD_FWMYIUC02GEEZ5 | All Organisms → cellular organisms → Bacteria | 540 | Open in IMG/M |
| FACEMD_FWMYIUC02GLW9P | Not Available | 522 | Open in IMG/M |
| FACEMD_FWMYIUC02H4V4D | All Organisms → cellular organisms → Bacteria | 503 | Open in IMG/M |
| FACEMD_FWMYIUC02HCGA8 | All Organisms → cellular organisms → Bacteria | 520 | Open in IMG/M |
| FACEMD_FWMYIUC02HCTU3 | Not Available | 521 | Open in IMG/M |
| FACEMD_FWMYIUC02HDPAM | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 511 | Open in IMG/M |
| FACEMD_FWMYIUC02HOIX0 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 523 | Open in IMG/M |
| FACEMD_FWMYIUC02I4B1P | All Organisms → cellular organisms → Bacteria | 528 | Open in IMG/M |
| FACEMD_FWMYIUC02IMKO2 | Not Available | 523 | Open in IMG/M |
| FACEMD_FWMYIUC02J3Y00 | All Organisms → cellular organisms → Bacteria | 500 | Open in IMG/M |
| FACEMD_FWMYIUC02JWO1E | Not Available | 525 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| FACEMD_FWMYIUC02F478C | FACEMDA_1824720 | F031579 | EDPIARLRPIQNTDRFELFYWSNVKERWTMFENLGRMKLMLESAHEIVENDPMFRVPRSR |
| FACEMD_FWMYIUC02F73QI | FACEMDA_7776350 | F090684 | VTVAVADSRGVAAAYAGAAFRHARSDDGYHADCVRIVTEEQLRLLSGPPGLREAHAVMTEQSVGGSDS |
| FACEMD_FWMYIUC02FMUDL | FACEMDA_5583170 | F000708 | MTKPDPTLVQIAARFTRHSVEKSGGAYLILDRPTANAIARLRPIPGTDRFELFYWSNLKGRWTTFGNLGRMRLMLETAHEIVEKDPMFHISRAR |
| FACEMD_FWMYIUC02G5VGS | FACEMDA_1432310 | F008318 | MTEDDVFQQAINYIFTGQIAPNPKHQPEIVDRKTCVVVVPKPDINGYARYYLNRFKMDISRISKRYAGRRVFYELEVEGDDIIFESLKADKTTVEFGLRSVHISLPGNIDQTEKAIKLVLLSIVSLIN |
| FACEMD_FWMYIUC02GDDHM | FACEMDA_2087630 | F034932 | MRRVRIESESNDLIAGFVAGVDWVNDSAVAVVDLDYRGPTAFVVLEDRDASGEDEVRRLTSDGIAGKE |
| FACEMD_FWMYIUC02GEEZ5 | FACEMDA_4689600 | F041174 | LDFFSDRNRSKVAVVVTADGRRVTVPLRDLQPQDVSLLGLLRSLLAGLEDLLGLLITGSRRENGGTRRNERH |
| FACEMD_FWMYIUC02GLW9P | FACEMDA_2797810 | F003187 | MGGVIMKKILVIVCSAILALGVAGCAGKAPVGKGKAPVVHTKG |
| FACEMD_FWMYIUC02H4V4D | FACEMDA_4108610 | F085675 | MTGPGGTGGRDLGAQRWGSEQEEINKMAQQERMAHEADRIHAEEAAEEGRSVAPKRPWWKFWAKG |
| FACEMD_FWMYIUC02HCGA8 | FACEMDA_1036720 | F036181 | VRAERIAEVQRQLAQGLARIDPHHRLMGRPVSYRVIDGETLEITFRDVAGIAEAEFSA |
| FACEMD_FWMYIUC02HCTU3 | FACEMDA_4216650 | F034932 | MRKIRIEGDSPDLMAGFVAGVEWVNDSAITVVGLDYGRQPAFVVLEDQDGTGEDEDLRLTVNGIEPKE |
| FACEMD_FWMYIUC02HDPAM | FACEMDA_3525270 | F045206 | SRGQIIEEIPGDELDEHRIVEAIVRGPGLSKAGRSPLGVAMPTSASQGTT |
| FACEMD_FWMYIUC02HOIX0 | FACEMDA_6767880 | F013114 | DARAAGHPDVRLRRLDGVPELEGRRSRGRAGGELAAGDYVRVNVRAPRNASLADIERAVSSLVGDHGTERYKPTQPLYTFRGTLTAVGDSGVTLTVKGGNRRATRLLLGQSASQTFATGDQTIFLLWQGKVPTVIDLSKLTVGDRVVVHVRADQGSSLAQVEASAANHVGDREP |
| FACEMD_FWMYIUC02I4B1P | FACEMDA_1409290 | F086527 | APEVYWPVADRSLRVVKTVRTQQVRRVQVIQSPLGKKQKTRQAVPQASTNYYATNLELGSIPPRFIAELGRSRWRVDTEVFQTLTTQAHLKQPSVHQSCALILLTMIRVLAYTLSLVFYHRQVLSHTRQTPPTFSEMARLLAYRFLPPRLDSS |
| FACEMD_FWMYIUC02IMKO2 | FACEMDA_8377540 | F025511 | MGILDSIRRLLGRADDAMTQADYAALDAVHHAEDRLDDATGGRYYDTVEKADEEAGEILDRLHLDNEPGGADEPAGTDDVTGASGSA |
| FACEMD_FWMYIUC02J3Y00 | FACEMDA_8271990 | F000708 | MTKPDPTLVQIAARFTRHSVEKSGGAYLILDRPTANAIARLRPIPGTDRFELFYWSNLKGRWTTFGNLGRMRLMLETAHEIVEKDPMFHIS |
| FACEMD_FWMYIUC02JWO1E | FACEMDA_6410250 | F034932 | MRRIRIEGDSPDLIAGFVAGVEWVNDSAITVVDLDYSSRAAFVVLEDQDGTDDYEVLRLTLNSIEAKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |