Sample 3300027588

3300027588: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8d

Overview

Basic Information
IMG/M Taxon OID	3300027588 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0293294 \| Ga0255101
Sample Name	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8d
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	94561825
Sequencing Scaffolds	63
Novel Protein Genes	73
Associated Families	71

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10
All Organisms → Viruses → Predicted Viral	3
Not Available	35
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. BFFFF2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Oregon
Coordinates	Lat. (^o)	46.1812	Long. (^o)	-123.1834	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F000922	Metagenome	833	Y
F001732	Metagenome / Metatranscriptome	644	Y
F001964	Metagenome	610	Y
F002794	Metagenome / Metatranscriptome	529	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005528	Metagenome	397	Y
F005740	Metagenome / Metatranscriptome	391	N
F006181	Metagenome / Metatranscriptome	379	Y
F007030	Metagenome / Metatranscriptome	359	Y
F007361	Metagenome / Metatranscriptome	352	N
F008489	Metagenome / Metatranscriptome	332	Y
F010991	Metagenome / Metatranscriptome	296	Y
F012040	Metagenome / Metatranscriptome	284	N
F012437	Metagenome / Metatranscriptome	280	Y
F013293	Metagenome / Metatranscriptome	272	N
F013351	Metagenome / Metatranscriptome	272	Y
F013864	Metagenome / Metatranscriptome	267	Y
F014611	Metagenome / Metatranscriptome	261	Y
F014838	Metagenome / Metatranscriptome	259	Y
F015586	Metagenome / Metatranscriptome	253	Y
F016940	Metagenome / Metatranscriptome	243	N
F017454	Metagenome / Metatranscriptome	240	Y
F021287	Metagenome / Metatranscriptome	219	Y
F022146	Metagenome / Metatranscriptome	215	Y
F028488	Metagenome / Metatranscriptome	191	Y
F028801	Metagenome / Metatranscriptome	190	N
F029603	Metagenome / Metatranscriptome	188	N
F030090	Metagenome	186	Y
F030360	Metagenome / Metatranscriptome	185	N
F030733	Metagenome / Metatranscriptome	184	N
F031069	Metagenome	183	Y
F032259	Metagenome / Metatranscriptome	180	Y
F033411	Metagenome / Metatranscriptome	177	Y
F033724	Metagenome / Metatranscriptome	176	Y
F034901	Metagenome / Metatranscriptome	173	Y
F034921	Metagenome / Metatranscriptome	173	Y
F037187	Metagenome / Metatranscriptome	168	Y
F037710	Metagenome / Metatranscriptome	167	N
F038237	Metagenome	166	Y
F039134	Metagenome / Metatranscriptome	164	N
F046365	Metagenome / Metatranscriptome	151	Y
F049576	Metagenome / Metatranscriptome	146	Y
F050372	Metagenome / Metatranscriptome	145	N
F054802	Metagenome / Metatranscriptome	139	N
F058712	Metagenome / Metatranscriptome	134	N
F060658	Metagenome / Metatranscriptome	132	Y
F066468	Metagenome / Metatranscriptome	126	N
F067451	Metagenome / Metatranscriptome	125	N
F069670	Metagenome	123	N
F071196	Metagenome / Metatranscriptome	122	N
F073249	Metagenome / Metatranscriptome	120	N
F078423	Metagenome / Metatranscriptome	116	N
F079618	Metagenome / Metatranscriptome	115	N
F081256	Metagenome / Metatranscriptome	114	N
F082572	Metagenome / Metatranscriptome	113	Y
F082578	Metagenome / Metatranscriptome	113	N
F082615	Metagenome / Metatranscriptome	113	N
F085155	Metagenome / Metatranscriptome	111	N
F088802	Metagenome / Metatranscriptome	109	Y
F089877	Metagenome / Metatranscriptome	108	N
F089915	Metagenome / Metatranscriptome	108	Y
F090287	Metagenome / Metatranscriptome	108	Y
F091069	Metagenome / Metatranscriptome	108	Y
F094904	Metagenome / Metatranscriptome	105	N
F094968	Metagenome / Metatranscriptome	105	N
F099191	Metagenome / Metatranscriptome	103	N
F100848	Metagenome / Metatranscriptome	102	N
F101143	Metagenome / Metatranscriptome	102	Y
F102624	Metagenome	101	Y
F104753	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0255101_1000274	All Organisms → cellular organisms → Bacteria → Terrabacteria group	13698	Open in IMG/M
Ga0255101_1001231	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5712	Open in IMG/M
Ga0255101_1001856	All Organisms → Viruses → Predicted Viral	4360	Open in IMG/M
Ga0255101_1003209	All Organisms → Viruses → Predicted Viral	3121	Open in IMG/M
Ga0255101_1003431	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3004	Open in IMG/M
Ga0255101_1005726	Not Available	2196	Open in IMG/M
Ga0255101_1005811	Not Available	2177	Open in IMG/M
Ga0255101_1006155	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2104	Open in IMG/M
Ga0255101_1006952	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1955	Open in IMG/M
Ga0255101_1007281	All Organisms → Viruses → Predicted Viral	1900	Open in IMG/M
Ga0255101_1009986	Not Available	1555	Open in IMG/M
Ga0255101_1010002	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1553	Open in IMG/M
Ga0255101_1010547	Not Available	1502	Open in IMG/M
Ga0255101_1011232	Not Available	1444	Open in IMG/M
Ga0255101_1011877	Not Available	1394	Open in IMG/M
Ga0255101_1013675	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1279	Open in IMG/M
Ga0255101_1014254	Not Available	1245	Open in IMG/M
Ga0255101_1014282	Not Available	1244	Open in IMG/M
Ga0255101_1015540	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1183	Open in IMG/M
Ga0255101_1016037	Not Available	1159	Open in IMG/M
Ga0255101_1017837	Not Available	1081	Open in IMG/M
Ga0255101_1018113	Not Available	1070	Open in IMG/M
Ga0255101_1018816	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1045	Open in IMG/M
Ga0255101_1019191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1031	Open in IMG/M
Ga0255101_1019702	Not Available	1012	Open in IMG/M
Ga0255101_1019754	Not Available	1010	Open in IMG/M
Ga0255101_1020795	Not Available	975	Open in IMG/M
Ga0255101_1022704	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	919	Open in IMG/M
Ga0255101_1023540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3	897	Open in IMG/M
Ga0255101_1023749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	892	Open in IMG/M
Ga0255101_1023992	Not Available	886	Open in IMG/M
Ga0255101_1024123	Not Available	883	Open in IMG/M
Ga0255101_1024395	Not Available	876	Open in IMG/M
Ga0255101_1026216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
Ga0255101_1026422	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. BFFFF2	832	Open in IMG/M
Ga0255101_1028188	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	797	Open in IMG/M
Ga0255101_1028380	Not Available	794	Open in IMG/M
Ga0255101_1028492	Not Available	791	Open in IMG/M
Ga0255101_1029288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	777	Open in IMG/M
Ga0255101_1032203	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	730	Open in IMG/M
Ga0255101_1032912	Not Available	719	Open in IMG/M
Ga0255101_1033589	Not Available	710	Open in IMG/M
Ga0255101_1035019	Not Available	692	Open in IMG/M
Ga0255101_1036441	Not Available	675	Open in IMG/M
Ga0255101_1038591	Not Available	651	Open in IMG/M
Ga0255101_1044007	Not Available	601	Open in IMG/M
Ga0255101_1046340	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
Ga0255101_1046967	All Organisms → cellular organisms → Eukaryota	578	Open in IMG/M
Ga0255101_1047598	Not Available	573	Open in IMG/M
Ga0255101_1048666	Not Available	565	Open in IMG/M
Ga0255101_1048738	Not Available	565	Open in IMG/M
Ga0255101_1050016	Not Available	556	Open in IMG/M
Ga0255101_1050301	Not Available	553	Open in IMG/M
Ga0255101_1050927	Not Available	549	Open in IMG/M
Ga0255101_1050989	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	549	Open in IMG/M
Ga0255101_1051815	Not Available	543	Open in IMG/M
Ga0255101_1053505	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	531	Open in IMG/M
Ga0255101_1054143	Not Available	527	Open in IMG/M
Ga0255101_1054477	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	524	Open in IMG/M
Ga0255101_1056060	Not Available	514	Open in IMG/M
Ga0255101_1056498	Not Available	511	Open in IMG/M
Ga0255101_1057269	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	506	Open in IMG/M
Ga0255101_1057883	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255101_1000274	Ga0255101_10002743	F000922	MGNCWGKRGKTKRGKGVATGNATADPDSMTKAQWERAKAEYLTGKGWKAIADDLSVPMDTLRSRACREGLTKVKAQMQTVCIEKKTQSLESLSALVRSKLAADAASTLERIDSYALDGIKDESVRETILGSVAKRSALVFGWSEQGESASVSINLLGSMPDRVAEIQVTNETETK
Ga0255101_1001231	Ga0255101_10012311	F012040	RKQSMINWLRGSKKESPKNLLELPDINLSDWQTDGQQAELAQILSMPVLRMALRIVAESMPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLAVTETAKEPEATFDKQY
Ga0255101_1001415	Ga0255101_10014155	F091069	LMKTPVVNRPDYTMYLENFAGMLWFHTDVHKWSSEVKLKYLEDLNLLQYLVNVPLVALVEEDNKKLAKFGEVTGWKVFDKMYLNNGKVGYVYTRSL
Ga0255101_1001856	Ga0255101_10018561	F028488	MVKNSSFDLDFGYGRKGETLVEELLTGGRTVEVKRDRKWWITNNLYIEVECWFNKSKAWEPSGLSVTEAAYWAFVLEQSTVIVPTHILKKGVLELGREISCEVPP
Ga0255101_1003209	Ga0255101_10032094	F000368	MEALKQVALTWFRAAASAAIALYLAGETNFKTLGAAALAGFLGPVLKWLDPSAKEFGRGA
Ga0255101_1003431	Ga0255101_10034311	F032259	PNGDPVMLAKPTKASVYSFDKNKKLVGPATVVIPAGWYALPKSK
Ga0255101_1003431	Ga0255101_10034315	F078423	MPDLPQIGAIDDGFVGVVSRIDPALIPASYVSNAVNRRFEDQVIKNRWGIVQPKWGGRWSSGSRIVTLTSGSSVGVPVSGTQIPANSQVVCDVDANTQIFSNGTLCTLDDNTNAIFSTAAFSFAPSPANKTVQFYNSTAPFEDILGVLQYRDPDTGANALLVAVNEERSSDGGQGKVWCIRPNQSPVEVPMNGHDIYSPVRLIQATNGVVMLRPGNARYYFTEADVNTGNNTVTLNVVPDLATGDIVNVGQIGNAAPLWNASPGSGQGFQLYVNVVNQVVSLHLTLADARAKTNSLPLNPDNNARYYIELASNTTGYDLAQDIVNNLNDGMPILMQSTATNPSALDAGFNRIPSTLSINSSDATADTIAVFNHNFIPGDQVTLTNIENGGANVTNKIYYVYPVDNN
Ga0255101_1005726	Ga0255101_10057262	F037710	MTTLMQKILKQRNLLSYASICLALMLLASSFLDLPPLIGNWENKAWSIINLELSDNYYPPGAAIALIPFLWAGPEFWPAIYFYYSLSAGVYFKLCQFVTSNKLRLIALIALPANSYLTWLCLTSADQVIELLTLLLFGYYAAKSRFKLALFFGFLLCFTRPAYWIGYLIIIYLMGKQRSREDRRTKQIFQRSAAVWVLLGVLSFNQIVFGSSNLSTSSSDTIFFSHQKYHYLSLPKFDMDVFLKNGQSTNPGSVVKNTNKLEFIEDPKTRGALVSILDNPQRFVFAEIQKLDSYFFPIQKVPNLPGQYELSPDEKSIIIGDERLTWSLTIGHLVFAIYRAFWMLLFACTLTWFALLLFSRTRFSGPEKYLLIPFMAGVIPGLLYYVETRFKICAELLAVPLHLIALQNLKQLGKSSGFAQLMVDIRRKTNE
Ga0255101_1005811	Ga0255101_10058114	F005740	VQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGVWIDGEKLTLALPYTQSTKKFTTLTGVIREATNTVSRLYEYDATTALETDLAVYDPDETLPQYRRSYLADRCNNEEDKPVTVMAKMRHINATSVNDYLIPPCADAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0255101_1006155	Ga0255101_10061556	F054802	HTMAMFGLIDEIMNVSKNPHASIIQRLRVMKNSLSLEDPMPLYDVTTLDLAIKALQAHS
Ga0255101_1006952	Ga0255101_10069521	F007030	MNATKAESPQMADPFIPTEQPTQAGTRPSIHFSMYAYGGMSSACIMSWVDLTAKFSWSDRQTDLRTIREDALISRSRCRATKWFIDSGKDVWIQLDHDIEFDASDIIHMAELAHEHQATVCIPYPCRTVPPRPALRPKAEHLQALKHQVNDAECAAELVPITMFASGCLAIPRKCLMATLDALAGSGVQYPYKVDWCEDVRVERFPTLWMPFAMESRPGK
Ga0255101_1007281	Ga0255101_10072811	F005740	HKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFTELTGVIREATNTVSRLYEFDATTALETDLAVYDPDETLPQYRRSYLADRCRNDEDKPVTVMAKMRHINATSVNDYLIPPCADAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0255101_1007281	Ga0255101_10072813	F007361	MSVLFSLEADCLGLHEQGATDPNWKQSIEEYRTRYKYVADCSTYGYLPKAVVHDSVKVYVKKDAEASAKECTERFGYEVHLPSVQALREYADAWASLHGVMTIEENELFKVDTLRRVWVHCFQNERAFPEEKAARLVTMNIQRHEP
Ga0255101_1009550	Ga0255101_10095504	F046365	ESYAVLSALLGTKCYVKVSPAAGANSATNPGFELTGTFLSAIPVINASLGELSVYEIELQGGVYSTDLT
Ga0255101_1009986	Ga0255101_10099861	F071196	MTMPPLDNAPFADAVLEDELARALEGLSNNPLSPNEQVAPNPPEDTGEPLSEREAALVRALYGYDIPLADPTLKDDMPAWASWCRSLWDSRREAVQMHLHLVERNRLFRAGQQWISAQGLGPWREPSRPRDAARVVYNMMDKALDQRLQIMMDQKPGFAVTPTTQDPEDKRKAQAQQLALEYQHEQQNMIRVAREAGFWAQTDGISFWHMHWDPDRGPWDERLGERPGQRKPLGDIGCQTLRVEQVRVSPNATATQAPHWVVIREVIAKQEAAFRYGLTGLDASASSLQTGNTPTYSGSEGMGAWVLTQTTIGEGQRLRDEEVTERFTVY
Ga0255101_1010002	Ga0255101_10100021	F014611	VWGQLGQLADTTGRPVFPFIGAGLTGQNALGGGNATSWNGNPLGLQLVVDSNFAAKTMIITRVGQGSGDAFEFYESIRGLMSVEVPATLGRTMSFHGYVSTFAAISGMIRKITQA
Ga0255101_1010002	Ga0255101_10100024	F082615	MATSTYLSNPVVLIGATSAATTDITDQVSAATLTVTAEALEDTA
Ga0255101_1010547	Ga0255101_10105472	F102624	VIGLYLYSVIVKWYRHNYIIIYTNMTWLLVLHSVLFVGTLTEYLICMKYITNNYDYKNEWFSVLLSLVFTPFYSCFFVRSFSWQRAKTYITAPERRVALKYPVLTGVLYTVETVFVFYALKTVTLSYYTILRSGFIIFNIPWFRYLLKKPVTRLYYASCVALVVSHGLVAAQYVFKYGAGGDVVQNTAIIFVSCFLNSTYNNLIEYSMARYGDMMSDTDFQVIFQATYFILAAPWAVIYTAKYPPPIDASAITMYFFIAFGLQLYMFNKIYILNNRESAIPANILLSGLDLVRRVIQLTYSFVWFNEPFDAVIGVSLLFLGASGGLLLYQYIRDYRYRYRYPTGANLDDDRHKMLDASEGEGGEHELQKV
Ga0255101_1011232	Ga0255101_10112323	F033411	VAVTKAQLIALTRETMDAVASDRWSDATITTVLSSVYGDEWSNILNAQPYYTFAKRTVTTDGDGMVSFSALSSGSGDSQQNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLFYTAGQALQILPVAASTTLYVYVNYKPTAFNQLATDSSVIDFPDGGE
Ga0255101_1011877	Ga0255101_10118771	F028801	NIKIPRSFPYKDYTCKVDGHKFHAMLGEDGEGKLIAGIDKDEPIYNYEDTLENWMIEAQEMSDFYHNLVDFLKEVKYIHNQEKNKL
Ga0255101_1013675	Ga0255101_10136752	F013351	MEDTAYLVTIATLAKLENLNLSVEEENLAAIPFAVLERRTGKLISKLEFHGTKTLPDGTLLKVTWQVQGNPELGLPTEQDLDILVALGVLTFRNNFAKTVVFQGREIARILGMNGVHGKFYQRLKVAMDRFIPLRFRALAESERHEDVNWVNVFQEASFMLDRQTGRCVGSVTWTDKIIQTM
Ga0255101_1014254	Ga0255101_10142541	F013864	ITLLIRSKNPIIPTMNTLLPSSSADNTDTLAKYVVLGIFLILALVTIQYIFRNHIGMIEGLTNRKSKTSDPLEDENEGDIITIAKRQEEVATKTHKSLNMDSHYNHYNKIIENMDEWVNAKIVNSLKNVSREVHGEGKMEDIVRHMNELNTMNKFKLTLEDCARYIDSS
Ga0255101_1014282	Ga0255101_10142821	F082578	TEEPEWVFPYDYMAIGESFFIPTLRPAQMIYMADIAAKKSRIKVKIYTCEKEGHLGVRVWRTA
Ga0255101_1015540	Ga0255101_10155403	F014838	MKESLKKIEELKNQLNTVKSELTNEFKAELKKIFVDNPTLDSVEMYLNNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNATKQYKPNPVLESLIELFGDVQ
Ga0255101_1016037	Ga0255101_10160372	F017454	DKTIPCVWWGMSATPGRMFGCHILLESGAMVVDLPLHALRHQADATQLWTCDKAQRWDAYGWHVEAHEPAYLTGLDCRVLTDDHKHVADLGELWFLLDHVSDGYSLEPGQHKHHWVVALDDGTFTCVPQDQVLVTEKSFTKTGGIPPIKRQTRVWSCE
Ga0255101_1017837	Ga0255101_10178371	F021287	MANLTLITLTAPSLPYNYCPSNYQQLANDIIGGTQATFNSAIGNSFFNFGPTVPALNNQIYPWLDEDGNWWVFNQGRWTSKNRVAPNGFDRRIFVGTPTDLLSYDGGDGTATVTDVTGPMWMIDTAFEARFPVGVGSFAASGAVSVQGTTTTTSVVGEDKHTLTVPETAFNEHTHGVAQLIAPANDDYYLVN
Ga0255101_1017837	Ga0255101_10178372	F008489	DSNLSDPKKEIQWLVQTRAYNFELPFGLKKLDSGDIFIDSLDGNVGFNVEYRPDQYPSWLEWAEWSECAITTQCDNLCPISNFQPQYRPKMRLPTPTDIPCNSTISTPTRNLYEVQLNISISGYCRIKSIRVHAYDVQESPVGECRTFQGCKILEGCDINPLLYSSE
Ga0255101_1018113	Ga0255101_10181131	F003748	MFKVNRKDAGSNYINAEGEYTVTVMKVEENLDVKGREVCKVTFATDEGASITDRFINQENTWFRVNQLVAATNHNVSDGTEVDFLGTKGSFANFLKAMIGLQLGIVTRFEEYEFNGEKKKTLRLKAMKPVVSTATPEEKPF
Ga0255101_1018816	Ga0255101_10188161	F050372	TATYANTPAINAAALMLAENIWTSRFSTQAGGVSVDGFSPSPFKMSNTLMASVRGLLAPYLNPSAMVG
Ga0255101_1019191	Ga0255101_10191912	F029603	VVYTSTLGLISREKSLKTFLPVDRGGKYAFIPIKASGYPQNLPKGPKCPKRYPQFSKSVGQQIPLPPALVAPNRSYAITSRPDQSQQLKLRAVFKGVREEDEAYFPAE
Ga0255101_1019702	Ga0255101_10197021	F031069	MTEFDVSAVDLSGILNASAEEKARQVPDPVTYHVLCVLPEIEEEYGDS
Ga0255101_1019754	Ga0255101_10197542	F082572	TASAAAADANNIGEDIVVLTLSMSCDTFWNYETELHVDRKQFSRKYTNRPEEEAFQTLSQFMCLHMKKHIEDELINDGKRDMLAKLEEVFPKFHIHGQTSHEILYPNDSTNSDHCRGDGKIFICTHC
Ga0255101_1020795	Ga0255101_10207952	F013293	VDITETMTPDIELTESELEAMDDIRIQDELSATVAELPASTEEQLARYNEKMEFLASIRAEIPALNVVEEVTEESYSVPSGRYDYVYTMGTI
Ga0255101_1022704	Ga0255101_10227042	F099191	MDAWIVLVTGGVVLVFLAAPIIGVMKVITTQQALNEQCGTNYNFFQVATAGDNLSRLCQIKNQTVTIK
Ga0255101_1023540	Ga0255101_10235402	F089915	LEQILEPHSEAANAFLISKNLIKSEQNFRDVSTKVANMIIADADGFISKAKAFANPVTE
Ga0255101_1023749	Ga0255101_10237491	F060658	LQFPLRFNAVSGTPGNYTLVLPYKNVAASEGLRSEFNADYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIIAGCAADPGDPAQDYNSTNAVCNPTLQFTAVANDAGNFVLGTTAIMCNDNIVTNAGISEATVAALVSSLQTVWDAEFGSAAGTWSVVSGNVIQLASSAFGTTTEVVPCTNITLEFSI
Ga0255101_1023992	Ga0255101_10239921	F100848	PNAIATETFMGGVTSMIEIRGAGPMSDSIQPVQGFSVGQDVKEALALEKTAFEDASGWNAVSRGQVTGESGRAIIASREQLERVFSPAVNALAQAFTDWCKVAMAGMAWGYDVPRALGAVGKGRPDLARAVSSTDLDGQSDVRVEPATLMPMPMAFRLYLLDNWLQSGIIDIKEYRRRQMFAVARDMSSPDEDQEARAKRVADAIRMGAMVPELRWQDNEAIHQDVLEREILLQDDLDPQIIAAAQERWTALANQAAQKQGAMAPPMGGAPPAGPGQPTGVPSFPAGQLPLASNN
Ga0255101_1024123	Ga0255101_10241231	F015586	MNTGGGVTVNVTGGLSTSAEIGQAVVNALRAYSRSAGPLALNIA
Ga0255101_1024395	Ga0255101_10243952	F094968	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFVQKDYNLCTTITADNAEITADQTNVTADGWSEDCYGP
Ga0255101_1026216	Ga0255101_10262161	F085155	MKKFIVLLSLLAIVSCGGGDASMNDAEISELIELADATGVAGEIAKVVCEPLTSLDAKSPSENKDSWQCKRDGRNVKFDVYSTAAEKETASKEALSLLGATGGAQTWADTPILCGDTWTMGVVDLET
Ga0255101_1026422	Ga0255101_10264221	F039134	MYDQLVFIHQQLKQREVGIELQRFTNVVTKPGVSYYEVPAYNEYLLLTNASALPIGTRIISDTNSIEIAVSQKTLVAMEEFSGLIAIELPNEVQEYPILEFIQI
Ga0255101_1027514	Ga0255101_10275141	F101143	LSESRQGMITAFYTYMKNPYATFSAGGRQEYPRSRDPKLLIAKSIREIAAQQVGNRLRSVLV
Ga0255101_1028188	Ga0255101_10281883	F030360	KTVNRSNKAFVRMVDSYQKWNESITADEPRATYEDDIFNCLFEYDLDGYNLAEYLKSKVNLAFCDAELVDILDDMIYVKKSLEDEMLKQWVTENFLTISDDVVGKKVNAKQCSRKYENHYITGIRPDTYQVTISDNINAKGGRIVGFENVTFVD
Ga0255101_1028380	Ga0255101_10283801	F066468	DSLRNATRFPLNSSEIVAILGGFFILVGALWLLGPLFQDVSRLIVVGIFYLISGLLAFAFRSLIKKPQFANAAEVVEALAVLCFTIATGVAISSLNADTEVSVFIASIPALGYGVWRSNLRRFSSSLIISISSVVFTLSGLEISNINLDSAGFCLVAVAALLLWWAQRPKVVGKFTLRFFGSLVSLIGLTIPPFGDMSNQSISNAIGMICAVAFFAYGVKKVFPEVVAITAIGVVVSEVKLVTEIISNSTLQGLATLITGILVL
Ga0255101_1028492	Ga0255101_10284921	F030733	LMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAE
Ga0255101_1029288	Ga0255101_10292882	F079618	TYSGNLSTSFDSSELLAVQALCHQLGSQNALLVQIAWLQISNFAQHSGHEFRWTSLLWI
Ga0255101_1029582	Ga0255101_10295821	F069670	LPDELLSVHFWILQVCFPTARWHFRHLGGWSKRLSIQLVISPGSTSGPRRRPRRHRHPPSAARLLGFLRKLWTKSSRTGWVHFELKKFAAFSGLSERQVQRAKNHLQDTGAVIFVTISNSSGSRGHKVYAGDPLTLDGTSKTLMAWSVLGRERHRWDKIRGDLHPLPCPKSSENPSKVASGCPRQPTDIQNAPHTREKLNSIGMTSLGVQVNGLKSCLDRGSSPPGLIWNVQRTETSTERNLAWFVVRKIARLWWEN
Ga0255101_1032203	Ga0255101_10322031	F001732	VDSTLVEIEKNDKGKRIQTSGLSVGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERRKGEEMLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVISALTTIIVFVVVFVILRLLATVHPAAAAAFSIFNMLGSMFVSIIKALTPKAFELSNLISKDKVEEFKSPLVKIVDVIQELKEKQKEFPD
Ga0255101_1032912	Ga0255101_10329122	F038237	INTIKAGHIATVLMQGEYKLNTGGRSGLPLNEYKGRVTRAYRFAITLAGEETYNNKYPDSVGKPNWFEFVKDGVVKHKTTGQLYLAGLPTNSKKNRFDLLVDGQPITEEQYNYIQKYRSDKEEAKFLTIAIDNVINVEDPATYVD
Ga0255101_1033589	Ga0255101_10335891	F034901	MDTNIQINMTRKFGGIYARKLRGPSRFVWTQESLGIIIHGIFQFHRSKPRLPLHNIAPHLRSLIRDHVKNIVCASHGYSNFSEDHFERICARWIRIPSVRSVLLKLQECNRFASLVGRTNATYDSLHADGFMPRLIYQAFDTEISRIQHSHPGCHLCRLPAIPRPCPQTSWGSCFYCGEGLIDKIDLNWVPKCECFTCETTSDDVL
Ga0255101_1035019	Ga0255101_10350191	F058712	LVLCIAFLLNDVGQIRQKASDTLLLEADILRTMGRVAVNLPRDVGEPLQNLLVAYSDAVLNEDWPRMQNGTRDQNNSSAGSLAKIIGISDFVYSNLYQFGHPQIGQQMLSSVTKLREYRLQRIEVSLKHPTIEKVALGLFFCLNAILVLMLTHADRPRPLFAATFLFTWLSLSALHTSLIMHNPYAGIDPISPAPIAAASARLKVMARSSETIFTGNPATATPPQQR
Ga0255101_1036441	Ga0255101_10364413	F034921	TNFQYKVTEAQKDFSSYSYPTTKEEYWQIVDKYWPQIKNIVLMFTLLDENELDRCVKERSPAIGSIFNNAWFKAPDNGKIHLIPAWHIFCDLCSESYLLHEPQN
Ga0255101_1038591	Ga0255101_10385912	F089877	MKIDIQKVDLTQFMVHEHSLNGEIVHLIQPQHIGTKWTQDNKHMRSVVVNYAGEVISASMPKFTNWGENPEHFPVPTSLKNATVVEKLDGSTLIVSKYNGQYILRTRGTVDASTMANGFELELFKSTILNKLQDNNDTWGYSIIWEWLSPINKIV
Ga0255101_1043925	Ga0255101_10439251	F073249	VFPHPSHTKQAPDIRIFTPHVIHSGASDLIPIDSSRSDEDPIVAARGAASIFTTTGLLATAGAAT
Ga0255101_1044007	Ga0255101_10440071	F067451	QYRDSIETCYFQVAPELAADAGKRVLLQGIDPVTNEAIRTYDTVSGEYVWGEYVTLPNPNITPFVRTTKQFKKPGLTGAQKPLTQGRLRVSTYNGTVTTEVALWGPSEENPEYRRTYLIGMPEVCGGTSGCNAQAENDCIDHGDGCVPPDEECTNTVVEAIVRLEFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYT
Ga0255101_1046340	Ga0255101_10463402	F001964	MSRNLFAPPRFKVQVSGAIGWSDLKERVVSYRTLEYPTRKEAETVAKELNPGEFTQGRIRVVPVEMAEDYDVYPTPERTRENSKS
Ga0255101_1046967	Ga0255101_10469671	F022146	TAFSICGVITGTFRLPNFCSCKDARFGGELSCVIGIQNYITIGASAWVLPCASPANMGYRAWASLLGLSKSIGNTWTASFTIRQPIPGASFEIGVANVGANAELSGDIRRFVISTRVAIGVCAKVGIGLFSKEICNPSALHWLPVTVLNGPLYDFSRLC
Ga0255101_1047598	Ga0255101_10475981	F081256	MKHRSPFVLFLVVLLSSGLRGELEFSAFVVLQKSELFVLRDLEQDQTSGFLNLGQSFHGYTLKSFDKNREVVTVQKDGRDLEIRLKVSKIKDGKITVAGMVSALNGQNAEGVRVSLFIGEESVIPLSESVRLSITPTRTAEGHMKYAAKFITITEGKEKVVLCPAVVALPGSPFAVKVGA
Ga0255101_1047634	Ga0255101_10476341	F088802	PDKGPWDERLGMAPGQKKPLGDLGCQTLRVEQVRVSPNATVSQAPHWVVIREVITKAEAAFRYGVTGLEAADTTMMSGNQPTYSGSEGIGAWVLTQTTIGEGQRLRDEDVTERFTVYVAPHPDALPEGLHLIIVGDTVVFGPSPLLWNAIPVVAVRDGSSDPSYYPRPVVEQWLDHQMRVNALLSKWVENI
Ga0255101_1048666	Ga0255101_10486661	F049576	PCVSYHTFTFDGSDYSYILPDAVEDVVGISWDLPDSTGVWQIIKNYRIDKNYYDTTTASIKTALILKESPMPGRTVNVQYTKFPTAITDNQELTVSGLPSSCEDVVRLGAMYRLLSTVDPGKVTATTVSADVLDQPVAAGASTSTAKYIFQLYTVRLQEEIAKQQDKFLNTIQYTR
Ga0255101_1048738	Ga0255101_10487382	F104753	MPNPTVITDAELTGLLKNVYSQFREKVQNLVTPLLAQLEKGRAGGPRNM
Ga0255101_1050016	Ga0255101_10500161	F090287	MPALTPQELATLGGCFDCMEPGLQQTMLLTLLQQIQAASPGAPLTTTSLGGLRTVTATSAVNPARKKFTLQNQKNEELFVKFGTGATTSDYHIVLPAHNTGSKHSDALM
Ga0255101_1050301	Ga0255101_10503011	F021287	QQLANDIIGGTQATFNSAIGNSFFNFGSTTPALNNQIYPWLDNNGFWWVFNGGYWTRQNPVAAGSSERRIFVGTTTDVLSYDGGDGTAYAGNPYSGAMWEIDTAFDARFPVGVGAFAGSGAVAVQGTTTSTSVVGEDKHTLTVPETAFNEHTHGVAQLIAPANDDYYLVNKSWSGLGSYPTQIL
Ga0255101_1050927	Ga0255101_10509271	F006181	TDMVVSDILERVFAEWNHGSGMESELFIRSKKRSLSVNDIVCVNGKYYLCESFGWNEVTPQFVNELEEEVSNHPNRIQGAWFALNDVMWDRKSKNNLELV
Ga0255101_1050989	Ga0255101_10509893	F033724	MPRPKSEMTSVAVTVSARLIPAHFAEWKRLGGVNWLRQHLRESIQK
Ga0255101_1051815	Ga0255101_10518151	F094904	VAIRSTKQSTTRSVFPGYTRPAENGPSTEGNPLNDFGRDTKCCEFPQTKNVIKRSSFRPRPIKHWRKSLMPSSTNKSRPTIGFIDRPGGIVFRGTACGCDTRVASKQNYVVEDISRPFLRECMPDEIIQNPGYKQVGVPGQPGSYQINTGIYETKNLSFNPKKRIIRSGNTNVSRAYHTN
Ga0255101_1053505	Ga0255101_10535051	F012437	SMKKDLVTNVLLRILATFAASGLGVIGAGTIAGVPVLKAVFMAGIAGVAVVIEGLSRAFLEDGKLTNSEINDVFNKVDKKAPKAKANETV
Ga0255101_1054143	Ga0255101_10541432	F016940	MPSPTVITDAELTGLLKNVYSQYREKVQNLVTPLLAQLQKAKAGGPRNMRWGGNNVFFDVVVGRPSGSTFSQSGYFPPDTTASEVQGNVGVVRAYTTRQIDGLAFVGTQSKDAAFTTIATKTMEE
Ga0255101_1054477	Ga0255101_10544771	F005528	TLTMSLGIAQAASAPAHTSDAINALQPLWQPPMADRLDPIQPIRFRHGDVSWLPSLAKQAGWPDHAIPKLTELVLRESGACPNRKGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDKSRNKWAAVCREMNICTQEPLLDPLTNLKAGLVLYRISGFEPWNPCNWRVCKAST
Ga0255101_1056060	Ga0255101_10560602	F030090	PRATQLKTQYNQVVMSVARNTYLKAQELIRDLNEAKIRDEDKNEIRLHLIKMVTTKPTEV
Ga0255101_1056498	Ga0255101_10564981	F037187	IQNSKVSTRRKMSIHTLIAGATIGTDNIDVDVPPTPRAEVEEAKYPRSLQEVAALDLSFLNDTWAADMLRDAMNAVVLAQDKPEIIKQKIDVWTYLSTYEPPRGEGFMFSRGDLVVESVQYNMQVGHSGGSMAHTMRHLQLLAKIGFPEYREGYTKKQS
Ga0255101_1057269	Ga0255101_10572691	F010991	PQATQEKVFNAVKELGYVKSHHPNQHFNNKLTQEKADAVVAGILENKSLEKIAEDTGLSPTTAFKLIRGVKVPVDYPENEEDWRKDVTGFLEVAIWKGTKRLAESSINLIDDRGLPVAVAVLTDKLAVIKGQPTSIHLAMTASVNHRDLMKDLKERDVTPVNDEQTPD
Ga0255101_1057883	Ga0255101_10578832	F002794	LGTMERKVSEGVSYNQGELTEETRKMVLESSAMANHTMTMFGLIEDIMAVSKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAHS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027588: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8d

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences