Sample 3300023689

Basic Information
IMG/M Taxon OID	3300023689 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290735 \| Ga0247517
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	32195824
Sequencing Scaffolds	31
Novel Protein Genes	32
Associated Families	31

Dataset Contents

Total Genome Size

32195824

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
Not Available	25
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.043

Long. (^o)

13.6183

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007739	Metagenome / Metatranscriptome	345	Y
F009043	Metagenome / Metatranscriptome	324	Y
F010305	Metagenome / Metatranscriptome	305	Y
F011079	Metagenome / Metatranscriptome	295	Y
F016923	Metagenome / Metatranscriptome	243	Y
F018933	Metagenome / Metatranscriptome	232	N
F024793	Metagenome / Metatranscriptome	204	Y
F025423	Metagenome / Metatranscriptome	201	Y
F025750	Metagenome / Metatranscriptome	200	Y
F026090	Metagenome / Metatranscriptome	199	Y
F028056	Metagenome / Metatranscriptome	192	Y
F030619	Metagenome / Metatranscriptome	184	Y
F036818	Metagenome / Metatranscriptome	169	Y
F038944	Metagenome / Metatranscriptome	164	Y
F042651	Metagenome / Metatranscriptome	158	Y
F044924	Metagenome / Metatranscriptome	153	Y
F060406	Metagenome / Metatranscriptome	133	N
F065459	Metagenome / Metatranscriptome	127	Y
F066368	Metagenome / Metatranscriptome	126	Y
F067292	Metagenome / Metatranscriptome	125	N
F068321	Metagenome / Metatranscriptome	124	N
F068474	Metagenome / Metatranscriptome	124	Y
F068527	Metagenome / Metatranscriptome	124	N
F072940	Metagenome / Metatranscriptome	120	Y
F079408	Metagenome / Metatranscriptome	115	N
F084949	Metagenome / Metatranscriptome	111	N
F089697	Metagenome / Metatranscriptome	108	N
F092391	Metagenome / Metatranscriptome	107	Y
F097372	Metagenome / Metatranscriptome	104	N
F098181	Metagenome / Metatranscriptome	104	N
F098663	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247517_101484	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	2266	Open in IMG/M
Ga0247517_102057	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2034	Open in IMG/M
Ga0247517_111051	Not Available	841	Open in IMG/M
Ga0247517_111176	Not Available	834	Open in IMG/M
Ga0247517_111284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	828	Open in IMG/M
Ga0247517_112586	Not Available	763	Open in IMG/M
Ga0247517_112753	Not Available	755	Open in IMG/M
Ga0247517_113257	Not Available	734	Open in IMG/M
Ga0247517_113375	Not Available	728	Open in IMG/M
Ga0247517_113473	Not Available	725	Open in IMG/M
Ga0247517_113622	Not Available	718	Open in IMG/M
Ga0247517_113926	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	706	Open in IMG/M
Ga0247517_114435	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae	687	Open in IMG/M
Ga0247517_114913	Not Available	669	Open in IMG/M
Ga0247517_116195	Not Available	629	Open in IMG/M
Ga0247517_117004	Not Available	604	Open in IMG/M
Ga0247517_117270	Not Available	596	Open in IMG/M
Ga0247517_117613	Not Available	587	Open in IMG/M
Ga0247517_117856	Not Available	581	Open in IMG/M
Ga0247517_118213	Not Available	572	Open in IMG/M
Ga0247517_118541	Not Available	564	Open in IMG/M
Ga0247517_118616	Not Available	563	Open in IMG/M
Ga0247517_119262	Not Available	547	Open in IMG/M
Ga0247517_119400	Not Available	545	Open in IMG/M
Ga0247517_119610	Not Available	540	Open in IMG/M
Ga0247517_119796	Not Available	536	Open in IMG/M
Ga0247517_119801	Not Available	536	Open in IMG/M
Ga0247517_120346	Not Available	526	Open in IMG/M
Ga0247517_120964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	514	Open in IMG/M
Ga0247517_121004	Not Available	513	Open in IMG/M
Ga0247517_121271	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247517_101484	Ga0247517_1014842	F097372	MSSESIAHTIQNILEQCNSTTISIGHTEGHFLSSKQFAVLEECADTLGSLESVAGIDTPSSSAITQASTEEDGVRSRRLQLAREIKQKQIQLTAASPGNRSQINLDIGKLLSERAKLDKLIKQFDTATIV
Ga0247517_102057	Ga0247517_1020571	F030619	SPLQQVWTACWSGLVLSGWDSMRVAWFLHQWACRSAPRGVAYQVDCMKKLCHNIRGASLHSKRWKVQPCGIRKDVVDCLCRLAVRSPENGFAFTRLSRSLPEPPAGEAIRHLQSAAMMASTPFPTSAAALVSLRSFVSLSKRARRNPRAPRRLPSSNSSCLEWPATRGGIDGYLEHLGHGLEERGATQAEFSQYVGDSLGAFCLSRARVVLRPCSGVSEDMRESYRCAGLLALRAEGKPFAMKATALRAPGYKVRVVGVPDARTFVEGSWIRESSRLLPPGHWTIDSESREIPNGLHYRRGHTFRSLDLSKATDGLSHAAVEVVIEALVRRGAIRPADHLMARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFIVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALDVYADRVASVGAQLNKGKTFRADHSWTACEVLALPRENCEDGMTLFVPPSIPPPGLRAPVEADPRLENLWLRRMERVIKSRFPWVKCDPRLHLPVEVGGLGYTGRGLAVGRGLRSRLGALVSRGPSAEVGVALIGKKPFREVGLYPHPLVRIPKPKAYWKAVKAVNQELAPSGADLVSVPLESFESFKCQLVESELRLVEGDRFRRKRVAGRPDSNKRSAVFRRLSVKPAKPLSRFGGLASLKRWALTCKNVRVTVDQDIASEIR
Ga0247517_106308	Ga0247517_1063081	F072940	MMPTWKRAMRHTGYSRLFLAGVLSQTRGSGTPPPLVVLRSKRKFIRSVAEAPPDMTRTQQNLVVAALHTVMGELPDHIFTGLETKARVTVTGSACWESTRAEGGTAQAVLEIMTKYDGDRMIPIIDLDTGENIEYRRKADFESIGTAVFWACLSEVMGEDPQYLSEVFLTLVKEPGKARVVTKGHAALKIVLDTVSKICAGPLKKGFKSSESGMGKSHHGWNLFRDMFSEEFEDILFSENRKLREEDVYVDHIERLVVWEELYCSSTDYQEATDRLIHLLGRIIGSVWMRKCGIPPVLRGIVMAICYRPRKVYFSASGALKTEGRPVEGDPDLRYVTLYRGVLMGDPLTKVVLHFTNIVARQLGQSMTDGSIFSHFPGNGYEAATHFHEAVWGHST
Ga0247517_111051	Ga0247517_1110511	F098181	PELLVPRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQPLAPVLVTDHSVPRIAPCSALETPPRIWIAPYTTLSLHASLLDYSTLAAFCSTSPHGSLRKLRLALCAGLRITPYANTCCPCSVHGLLRVPL
Ga0247517_111176	Ga0247517_1111761	F068527	LWRLNLDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAG
Ga0247517_111284	Ga0247517_1112841	F038944	MRSRPSHAAKSGVGEHTARESESAQQYAPGKSVWRAPTPPAMRS
Ga0247517_112586	Ga0247517_1125862	F010305	LKRAEKPHLKFSGRKALDGPATRPQTPLAVENGVGKLTAPEKGAPNVSMGK
Ga0247517_112753	Ga0247517_1127532	F011079	LREKRRDPWLWANASSKAMADPKPVVKTRENNRRRVLTWFAGRWRNHQLKRAEKPHSKSACRKTPDGPATRPKTPLAVENSVGKPAAP
Ga0247517_113257	Ga0247517_1132571	F007739	KWLAASKIDVDRFRIIPGDWGKVRSGWLTGLLLNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARGD
Ga0247517_113375	Ga0247517_1133752	F018933	VPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIVDCSAFLTPCLVSLADCSVLNT
Ga0247517_113473	Ga0247517_1134732	F068474	MIFFRVSAISTGSAAVFDSAFAPCHGSRLFTLRLPFNHSPAVSFLTSPTLGSFSRGLPSLRDLPGADALFVPAFAVFLLPVSTFYF
Ga0247517_113622	Ga0247517_1136221	F089697	SILITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRGPALQLDRWPTFRLGSASCPSARPAANLRLASTVPLFRSSFGDPSGLRLTILVSSSLRPTILVPPGLRRMALPPARPTTYLRFASMPSFGSAGGFIRLAPSAAPASRLAPPPVCTGCFTLRLYRP
Ga0247517_113926	Ga0247517_1139261	F098663	XEVRLTPLTDEIPVVNLYLTINDSYRDSFGAKTSRYGPHELGYRRATKTFTKXCKTIPLNLIKFKFRFT
Ga0247517_114435	Ga0247517_1144351	F025423	PISSLAHHGHATVLSIAFRSAVRIVCLLPGSRFGGYRFNAFRRAAAYLSETEPFARNGFSLARNGSRFHGLPSGVKGPSLLLRCLACRLRCPFGHSAPLPELVCPNSCRFHASSPLHFCPQTHPAALPVSTPLRDFSLPRDQSVQRALLPSGSPSESARSPLAPRSCFYY
Ga0247517_114913	Ga0247517_1149131	F016923	VRVRFFFSGRNSPLDVAFCSPAATADLSIRLRGRVDAPGLHLRGDSETSAWPVRSRTPVPAPAFCRRPGARSTYETRCQVRFQNSLSVIKLPLPSGTSRSLGLVALNLIPNREVYPCESPDFPSLPAALEIITYSLSASDHRSGPEVTGAICLVP
Ga0247517_116195	Ga0247517_1161951	F066368	AFQLASTGGCATGLRTRSRHACDFLSRLNHLAPGQPPLLAARSPDATGLASSLIDCFFSQSSGVVFNIASLWKFFSRGLPSHRDLPVACTLFVRFSAFFFWRTQFLILNPARAARTVLIRSSNQSLFWQLRFIQARNLPELLDSTRNGFSSPLAAVSSFAFGARERARGTGEFCLRCPVFQLALRGAGSISLTRLFPGCPGLSWKRSIS
Ga0247517_117004	Ga0247517_1170041	F060406	GELNSTTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSSSGFTGFDSLGLRLVLLPPAGFLMHP
Ga0247517_117270	Ga0247517_1172701	F067292	DESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFHRLLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPYRRRTSDSHRLLRPPALPVSTHPTCVGCFYFRLG
Ga0247517_117613	Ga0247517_1176132	F079408	MPVRPFGSAAGIGLPQSPQLPRFRPVAFPAGELIRLLSPSPLPSRNFCSLGIKAFNGRRRRPVRLPISPDFRLLPATVLFLEEGYGSSFAVRYVFGGLLFLK
Ga0247517_117856	Ga0247517_1178561	F084949	LDARTSVEMQENSDIAVRLKIGRDASRWETTPVLWRAEAPLRMERMVSALVTASKEANNLFREVSYCSHNPRFDTERDMP
Ga0247517_118213	Ga0247517_1182131	F025423	PISSLAHHGHASVLSTAVRSAVRLACLLPGNRFGGYRFNAFRRAAAYLSETGPLARNGLSLARNGSRFHGLHSGVNGPGLPLRYLACRFLRPFGLSAPLPELVCPNSRRFLASDPLHFRRQTHPTALPISTPLREFWLPRDQSVQWASLPSGPPSESARFPLAPRSLFYC
Ga0247517_118541	Ga0247517_1185411	F009043	SQPNSPPACAALSFAIRVARCCPFRSPPPSFESSGSMRPGSPAGFPAWNRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRYAQDPHQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNSFDCLSLPGSDSILLVPMPDHCSRLASCSAARCS
Ga0247517_118616	Ga0247517_1186161	F044924	MKAPEIGADNGSKVMNSPGFGFETKPSGGALDRTGSQRSFGVEAKEQVGSVDLVMVPKASLRASERPFRVSGSGGMHE
Ga0247517_119262	Ga0247517_1192621	F028056	PGFTARLSEPPACSAFDPQPNTPDSTFAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACPFDSTYKLCADPFHRKLSARFGFEAETGRIHHLRPVIHAPLMRSHDATPSPLPFGLFLPSGSKRSTGFITGSSPYRTPDLPFTPRCAFFRLRFGSVLKTP
Ga0247517_119400	Ga0247517_1194001	F065459	GTLIRWQTIKRDAGGERREIGPGAKVNLSSGEWVERFDPEGPKNPKGERRFKKLTKLLD
Ga0247517_119610	Ga0247517_1196101	F068321	RMSLYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLHIRSLFLFRRSLS
Ga0247517_119796	Ga0247517_1197961	F042651	GAALTPGIAQRAEVLLTRALGPDADSIKSGIWYGPLEQAFAQSNLMYNVQIVNAQEVKGDKTLDMSKRYFSDTFGGRKYHKSATFSANRMDLLVMENWYIGELSPLELYDFGGGNVVAPVPDIGGATGNASYLTSHMFAYNTCFNLANSAPRAGLYVQNAAVPTV
Ga0247517_119801	Ga0247517_1198011	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIHKLDNL
Ga0247517_120346	Ga0247517_1203461	F025750	MEKADAHRSINPLPAKTGSGERRAHVTPSPDAEFRPCMPVGERAG
Ga0247517_120964	Ga0247517_1209642	F026090	VRRWFGKRRQVVWAEPELPPFIKINPMAAAVPSDTIQPGDITMGIMAREFLAAEDEYPE
Ga0247517_121004	Ga0247517_1210042	F092391	FRGPHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0247517_121271	Ga0247517_1212712	F036818	AGAGLLVFGMTATAQDRDRDPDSYRSERDARFNDQHWRGRLFDNIREDVEHVRSVTWPGGGDSYRLDRTVDQLNQLQSKLADHVYDERDLDDVIGVLSRVVSDNRMAPRDRDILTDDLTRLREYRDHHADWDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023689: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences