NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10001035

Scaffold Ga0209229_10001035


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10001035 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11392
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032259Metagenome / Metatranscriptome180Y
F036666Metagenome / Metatranscriptome169N
F072266Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100010351F032259N/AKVVLVPSGDPIMLAEPTRASVYAFDRDGKLVGPSTVKIPAGWYALPKAK
Ga0209229_100010355F072266N/AMIQTPKQEFQRDKQRLQSVERMLETPELQAALLAAFNNFCWNLPPSENPQHGWNANCKRAGARAFLEELNGLVDFREPKKAPTQNLE
Ga0209229_100010357F036666N/AMYNQGFQAVVRAAARLRQTAQGARILAEWLGDGGTPVDRRQAQDRIDTCNRCIHNKPTDARSITKTVAEAILEQEQARNDLAMFLQGEGLAGTCDVCGCYLKLKVWVPLSYLGKTEMPDNCWISQERKAI
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