NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186199_104972

Scaffold Ga0186199_104972


Overview

Basic Information
Taxon OID3300016910 Open in IMG/M
Scaffold IDGa0186199_104972 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in ASW medium, at 20 C, 30 psu salinity and 572 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0744)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1829
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045520Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0186199_1049721F045520N/AMAFNRLYKQIETLIRTDDEVADSIPCKSDILSLRECRKGGKTCDDLGLELLRCMAQYKVDTTEKIRQAIGVAKYNEYVKAMVEKHGKEKAEEIIAEPSEQLKDIEAYQVLHRVANNTHPKGAPKTAEGIKEWTYADQVRLEMGEQEWWDAVKIVGCEFGVEKADALFGLAKEKELIESAQDRLVPGLKEKRAQGLEAYKKVEASVKEAAPGAKSPADYAAAFKDLYPTKEDLESALK

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