NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186185_100243

Scaffold Ga0186185_100243


Overview

Basic Information
Taxon OID3300016757 Open in IMG/M
Scaffold IDGa0186185_100243 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in f/100 medium with amended seawater, at 20 C, 28 psu salinity and 637 ?mol photons light - Oxyrrhis marina CCMP 1795 (MMETSP0452_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027184Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0186185_1002431F027184N/APQHRDMSMHDLLEGVRMMAQAMRAFGEQNTEAGTRSLADAEQRLQGAAGLEGVLGSLQSSASRVPELEASFRSMERRLQDGGEDGAIAGNFRQSGSRTDAQILKKVSTRLQDFEAQITAQLSNMQGDFDKKLSHLNRGASGMRPLDTTSGNAGLDTIAEDLDALKYDVGELKDLLSNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKGEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVEISA
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Institute for Fundamental Biomedical Research
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