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Sample 3300016757
3300016757: Metatranscriptome of marine eukaryotic communities from unknown location in f/100 medium with amended seawater, at 20 C, 28 psu salinity and 637 ?mol photons light - Oxyrrhis marina CCMP 1795 (MMETSP0452_2)
Overview
Basic Information
IMG/M Taxon OID 3300016757 Open in IMG/M GOLD Reference Gs0128947 | Gp0211897 | Ga0186185 Sample Name Metatranscriptome of marine eukaryotic communities from unknown location in f/100 medium with amended seawater, at 20 C, 28 psu salinity and 637 ?mol photons light - Oxyrrhis marina CCMP 1795 (MMETSP0452_2) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 3681794 Sequencing Scaffolds 1 Novel Protein Genes 1 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F027184 Metatranscriptome 195 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186185_100243 All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina 1249 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186185_100243 Ga0186185_1002431 F027184 PQHRDMSMHDLLEGVRMMAQAMRAFGEQNTEAGTRSLADAEQRLQGAAGLEGVLGSLQSSASRVPELEASFRSMERRLQDGGEDGAIAGNFRQSGSRTDAQILKKVSTRLQDFEAQITAQLSNMQGDFDKKLSHLNRGASGMRPLDTTSGNAGLDTIAEDLDALKYDVGELKDLLSNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKGEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVEISA
