NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136236_1000325

Scaffold Ga0136236_1000325


Overview

Basic Information
Taxon OID3300010230 Open in IMG/M
Scaffold IDGa0136236_1000325 Open in IMG/M
Source Dataset NameFilterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFidelity Systems Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7162
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location
Location NameConwy River, Conwy, North Wales, UK
CoordinatesLat. (o)53.2Long. (o)-3.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F065407Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0136236_100032512F065407AGGAGMFTFDEQYKKYEELTDRTKQAYEFWYNCVLFTWKDLYKFGK*
Ga0136236_10003255F004517AGGAMVKMIPTTPMSRKYKKEDAMLRPHTETTLEKQQRERLERRAALANKLKDLDKEVK*

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