Sample 3300010230

3300010230: Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA

Overview

Basic Information
IMG/M Taxon OID	3300010230 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121427 \| Gp0154116 \| Ga0136236
Sample Name	Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA
Sequencing Status	Permanent Draft
Sequencing Center	Fidelity Systems Inc
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	114345546
Sequencing Scaffolds	27
Novel Protein Genes	40
Associated Families	40

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Conwy River, Conwy, North Wales, UK
Coordinates	Lat. (^o)	53.2	Long. (^o)	-3.82	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000506	Metagenome / Metatranscriptome	1070	Y
F000857	Metagenome / Metatranscriptome	858	Y
F001629	Metagenome	660	Y
F003392	Metagenome / Metatranscriptome	489	Y
F003640	Metagenome / Metatranscriptome	475	Y
F004204	Metagenome	448	Y
F004517	Metagenome / Metatranscriptome	434	Y
F005200	Metagenome	408	Y
F007522	Metagenome / Metatranscriptome	349	Y
F009320	Metagenome / Metatranscriptome	319	Y
F010521	Metagenome	302	Y
F010743	Metagenome / Metatranscriptome	299	Y
F014456	Metagenome / Metatranscriptome	263	Y
F016373	Metagenome	247	Y
F018874	Metagenome / Metatranscriptome	232	Y
F018879	Metagenome / Metatranscriptome	232	N
F021938	Metagenome / Metatranscriptome	216	Y
F022833	Metagenome	212	Y
F023572	Metagenome	209	Y
F024733	Metagenome	204	Y
F028495	Metagenome / Metatranscriptome	191	N
F036460	Metagenome / Metatranscriptome	170	Y
F037627	Metagenome	167	N
F037702	Metagenome	167	Y
F039531	Metagenome / Metatranscriptome	163	Y
F043287	Metagenome	156	Y
F044911	Metagenome	153	Y
F047492	Metagenome	149	Y
F048157	Metagenome	148	N
F048985	Metagenome / Metatranscriptome	147	Y
F049485	Metagenome	146	N
F061649	Metagenome	131	Y
F065407	Metagenome	127	Y
F076368	Metagenome	118	Y
F078663	Metagenome	116	Y
F083895	Metagenome / Metatranscriptome	112	N
F091218	Metagenome	107	Y
F096599	Metagenome	104	Y
F101053	Metagenome	102	Y
F102396	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0136236_1000016	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	31991	Open in IMG/M
Ga0136236_1000035	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	20223	Open in IMG/M
Ga0136236_1000042	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	19318	Open in IMG/M
Ga0136236_1000114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11741	Open in IMG/M
Ga0136236_1000129	Not Available	11161	Open in IMG/M
Ga0136236_1000136	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10978	Open in IMG/M
Ga0136236_1000170	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9946	Open in IMG/M
Ga0136236_1000218	All Organisms → cellular organisms → Bacteria	8820	Open in IMG/M
Ga0136236_1000309	Not Available	7311	Open in IMG/M
Ga0136236_1000325	Not Available	7162	Open in IMG/M
Ga0136236_1000366	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6707	Open in IMG/M
Ga0136236_1000635	Not Available	4891	Open in IMG/M
Ga0136236_1003136	All Organisms → Viruses → Predicted Viral	2028	Open in IMG/M
Ga0136236_1003313	Not Available	1962	Open in IMG/M
Ga0136236_1003700	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1846	Open in IMG/M
Ga0136236_1003794	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1818	Open in IMG/M
Ga0136236_1009111	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1118	Open in IMG/M
Ga0136236_1009128	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1116	Open in IMG/M
Ga0136236_1020348	Not Available	812	Open in IMG/M
Ga0136236_1021206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
Ga0136236_1023940	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	774	Open in IMG/M
Ga0136236_1024321	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	770	Open in IMG/M
Ga0136236_1024575	Not Available	768	Open in IMG/M
Ga0136236_1031510	Not Available	696	Open in IMG/M
Ga0136236_1035495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	602	Open in IMG/M
Ga0136236_1036187	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	566	Open in IMG/M
Ga0136236_1036468	Not Available	553	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136236_1000016	Ga0136236_100001621	F048157	MATTAEVGTPLKPKEAQPDIGVLDAIKKTRGEDEGKSMNALQVVQASMANQLPPGVTMDTLLRKLASALQDPNNKLVQIGNSAFLVTLVGDGVVEFHTFSAEQPQKLLKNYIGLANTLKKQGIKKATTYSDRPEFVDLAKKSGLPVKVGQSQKMMGNEMKPVYTFELDL*
Ga0136236_1000016	Ga0136236_100001639	F049485	MAHSGLQPISNILGSKDIQSLQLWLKRVGASMPDISTVERKIMENQKKPPFVPQEMKGRMTKNTYKKQGSSEPDWKGTFMYQGQVITFGAWENDAGFGPYYNIKLNDPNWNKQQQQYPKEVTDKPARSYPKDSEIPF*
Ga0136236_1000016	Ga0136236_100001642	F102396	MLLFKTKRLERLEQEVVMLEDLFAQALQRIDKLEEARWGLKVDGTPKAKPGRKVKDERIS
Ga0136236_1000016	Ga0136236_100001644	F022833	MATKLQDSLVRKIQENRELKDTIKDLHTQAEKDKEFLREVQDESNNLELALKKCIHSKAELNDKIEQLTDDLEKYTELYARATLVVTALGEAVFFLTKESNHGK*
Ga0136236_1000016	Ga0136236_100001645	F037627	MKPLICVDCKWHLASKSSSLIANYDRCKASENINLVTGESTYKYCESMRLADGECGMDAKLFELNQAEETPNGN*
Ga0136236_1000016	Ga0136236_100001646	F061649	MRDQTDCHYPHTRLCLQDCEDGCRARKSVWRKRTIRELEDQELEDEAFARIPQHPYECKHLGICNDRPTHCLDCPSNNA*
Ga0136236_1000035	Ga0136236_100003526	F078663	MITWFAIQFTDNSTGYQKMEDGNCIGVYRADGTVISSEEAVEYTCTDMNATAPSWA*
Ga0136236_1000035	Ga0136236_10000358	F001629	MILNQGKLAGGLVDELLEVVHKYDETLYMATVIGALELVKQQLIQDSIEDEDE*
Ga0136236_1000042	Ga0136236_100004211	F043287	MIIQTQAQELSPEVMDVATKVEILCPACNRDVDTAELAAQKCNECGADLSDPKQHVAVAVTSVPVIGITW*
Ga0136236_1000114	Ga0136236_10001144	F028495	MSVQMTETESVVGFPALESNYAVLINNAIGEHRNSDVNYIVRSYNMEKNNITRKSVIERLRDAF*
Ga0136236_1000129	Ga0136236_100012911	F047492	MNFDKNIFAQGQSLFTQDEFNKALTEAKAEIMAIAIQTTKQAIFMERKACAQLLMNMAEADDEGAVCTALRNAAEEVMNRIPAQCQ*
Ga0136236_1000129	Ga0136236_100012917	F018874	MSEYDQAMLDRMQMLEEALERAETGIATRDDWDVIRFECGIPRRYKTTLETVSIRSEQWL
Ga0136236_1000129	Ga0136236_100012925	F037702	MLSEETVKQIFFYCDVYGPDALIADEVDICQFADKIIQYVTPLITQKEHQRCVAIVDDMNKEVGRALLNQRP*
Ga0136236_1000129	Ga0136236_10001295	F044911	MTPAELLHKDAARYATNRKIAYIEAFHKGEAEHMSEEALNGRWLAHYEGYREGYWVATGDTKFSTDPIKFNAEGKATL*
Ga0136236_1000136	Ga0136236_10001367	F021938	MLCPKCGYSEGNHIETKKTDEEFFLEWWTPTIGEEAAKASWQDKVAMKSRIAPMVMPDIEGHISMADGTWVSSRSKHRENLKRNNCIELGNDVPVSQKTHEFSRKEQEARKRQIAEITYSKLNYR*
Ga0136236_1000170	Ga0136236_10001702	F048985	MPNTSQKTVTTSATLLVTANRADQLVYLHSSSGTIYLGNSDVTTSTGYRMDNGDKLTLQLSDNEALYGITNTGTATMMVMATVS*
Ga0136236_1000170	Ga0136236_10001708	F000506	MAKLKITRANGEVSEHKITPGVEYAFEIKYGAGISKVLREHERQSEIFWLAWECLRRANVTVTTFGLEFIETLDTVEVLDDAKK*
Ga0136236_1000218	Ga0136236_10002184	F003640	MLAVVYDPRYHTFDSWASLMCEAYAGQQLSIPNESTDWQEWAAGLKAIDVFMNEGIPGPYNFNKWQDWAQALVGAVNQPTVE*
Ga0136236_1000309	Ga0136236_100030911	F023572	MKTPKSKRGLYYNINKRRKAGLPAKKPGQKGYPTAQAFKRSKRTAKR*
Ga0136236_1000325	Ga0136236_100032512	F065407	MFTFDEQYKKYEELTDRTKQAYEFWYNCVLFTWKDLYKFGK*
Ga0136236_1000325	Ga0136236_10003255	F004517	MVKMIPTTPMSRKYKKEDAMLRPHTETTLEKQQRERLERRAALANKLKDLDKEVK*
Ga0136236_1000366	Ga0136236_10003662	F024733	MQYKKFDQRLHDACDPPARNAVAEWLKNLWLVDALPNPDKYAVDLVLSRKGEHIGYAEVEVRDWGMDFCPYNTIHIAKRKEKLFNHPRTTMYVVTRDLTHAYWIRADKIKDCPVIEVPNTAVAKEEYFYDVPKNLWKYVDLRELF*
Ga0136236_1000635	Ga0136236_10006357	F096599	MEINTIIHTEEQVRVSVDQYDEGVWLSLQARGASMYAVLTRAEAEQMLAGLQAILNKEVTA*
Ga0136236_1003136	Ga0136236_10031361	F018879	NYTYQIDDSWVMDQTGADNTSALFLNPDVIQWGSLRELGPNNEVFSSADASLDQYIMEGTLIVRNPAGVAVLAAISPTGAAVTTPRPTXXXQVKRYLA*
Ga0136236_1003136	Ga0136236_10031362	F000857	MDDDIKVNEEYYSKGILEAGVDGVFRHNDKLFNEVKSGTWSQTFKTPNIEYKVGAVDGVRYVQYDQKNVEEVKQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSKWFANRPWELIKQDREDKILFYAIVNEYYSDFVCHPSGKIPIPYNPSIPTK*
Ga0136236_1003313	Ga0136236_10033133	F014456	MASRAYVVDIAGGTATATVQLQAKQTLKQFLVSWVNAAAGKIELSLSATSQIGTAQPDSNVLARVSASAGANTATARFDISQPVVAFQSIYVHCTGAGNLGTAVLS*
Ga0136236_1003700	Ga0136236_10037002	F004204	MVIYDPRGLTWDHWCSRMADLFAANQLGTVXXXVTEDKWKDWADGIQGIGYFVNSAVPDPRGFNEWYQWAESLVGIMNVDTRQL*
Ga0136236_1003794	Ga0136236_10037944	F016373	MKTTQNQNHSTHLSFSDDGWILIHQGSPLCDYKTTYADVMKVVAYYKITLPEVTWNGNRMEWVSTSTIEEAIAA*
Ga0136236_1009111	Ga0136236_10091111	F005200	VDPITIFAACKAAHAGIRECIDLYQDFKKDGKDVGDIVGDIGKNLGAFFTHQESFKEAEKEAKKNPLPKNISINEEAMNRILRQQQLEQMETDLREMIIYQIGMPGLWSKFVEMREVVRKEREKVEREQKKPWSWLLSKDGNSLTNGKFVHRYLLAALSS*
Ga0136236_1009128	Ga0136236_10091282	F091218	MDSKSKNRQLMPETAKVVDYFRTVFPKIKVIYAEEGDYRIGKKPNPSKYVVPCFSEPVKPKKGKKK*
Ga0136236_1012624	Ga0136236_10126242	F010521	MKLTPSIIKNLYSAIYCMKPFKRWPMPLPEQIKFVIDQDDAMGTYLYDDGEKYEHIITISEKKCGHLSTVIRVLAHEAIHMSRWKTPKWSHHDAEFRRRTKVVSEELGFDPLEL*
Ga0136236_1020348	Ga0136236_10203481	F010743	XVAHVNTVLKHLGAGVYAEVADLINLLHGQAKPQIEASNQATPVEPVTTEPPTE*
Ga0136236_1021206	Ga0136236_10212061	F003392	MNEYDFGSRDKSQKRKAHRNGDDQIQYLLSAEEQLLQSISARAPLPEVLNGICSALDCQIGNVISLICLPGDDASGLAAIAMNAALFGLYTFCSEGVVAENDELLGSLEVYCCVPRSPSLEEFQLIERAKCLAAIAIKRHNEAGHHDNWCIHGDRPVRGSVLEWPVSMN*
Ga0136236_1023940	Ga0136236_10239401	F101053	XXXXAKPSVFSPQGYSSQAEGLKWWDSFFAYIANDTKLAQGFETKDRTWRPDLVWIVNATNFAKIIDGKYQK*
Ga0136236_1024321	Ga0136236_10243211	F009320	XXXXREVFEDNYGLNCISGAILNPVNDQGKVTNHKSYGINIMRVGMERGTFKINESCVEFLDEARNYAIDDAGRFSDPDDHIDSARIGILALIQGHGESLVSRANTFQFRRVEAPEGKVQRI*
Ga0136236_1024575	Ga0136236_10245752	F083895	HGVTKGLFLCQLTVLRALAKNLARAATKTGLLSSLISINMKDVSIVSPFFGASSSRLALLKSIIAVAVDNNV*
Ga0136236_1031510	Ga0136236_10315102	F039531	MTLDLTINEINIILQALGNAPYASVFELIENIRTQAQAQVQ
Ga0136236_1035495	Ga0136236_10354951	F036460	VAQTPRFDEIIMQDIRPTDGWLYNVTTGTTEMGTPVEVTQDRFRSVFPNTTKPWARKVANGPGCVGNPCDMIEHQIGWGADRLTWYAEQQFWNTPLFCYDQDMHITAAMEHISQIISKILKPATTAISSNFLRRRHLLWSFVKNVANKNCGVQNSDGVFTFQWTNDANGDEAFFDCSVSPTRVFKLVPQNVDWLKVPQSA
Ga0136236_1036187	Ga0136236_10361872	F007522	MSLKEAGLWWVASMVTIIVAYGMFENAKQTHYWRGRKDGWDMHRRMIDNKTNADNN*
Ga0136236_1036468	Ga0136236_10364681	F076368	MTEEEEAAQKPARSGKVHVEGQYEYKNLEIAREAAEVACTAAARLKPSRMKTIDDDDWTEHPDRSD*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010230: Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences