NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103763_1026268

Scaffold Ga0103763_1026268


Overview

Basic Information
Taxon OID3300008796 Open in IMG/M
Scaffold IDGa0103763_1026268 Open in IMG/M
Source Dataset NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Duisburg-Essen
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Source Dataset Sampling Location
Location NameUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006424Metagenome / Metatranscriptome373Y
F018020Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0103763_10262681F018020N/ASDTLGDGTTEKVSMILSGYSSLTLEINKVPIPDPVPPPKEWVI*
Ga0103763_10262683F006424N/AVIGSGRVDSVFVGNDFPELGTDLVTALSSLDVNYFSHLFLFI

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