NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008796

3300008796: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-1



Overview

Basic Information
IMG/M Taxon OID3300008796 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117972 | Gp0126352 | Ga0103763
Sample NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Duisburg-Essen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size124526849
Sequencing Scaffolds14
Novel Protein Genes24
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans1
All Organisms → cellular organisms → Eukaryota → Sar4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus → Brachionus manjavacas1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → eutrophic pond → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000020Metagenome / Metatranscriptome6197Y
F000068Metagenome / Metatranscriptome2731Y
F000070Metagenome / Metatranscriptome2710N
F000073Metagenome / Metatranscriptome2639Y
F000241Metagenome / Metatranscriptome1481Y
F001926Metagenome / Metatranscriptome616Y
F001939Metatranscriptome614Y
F003249Metatranscriptome497Y
F004604Metagenome / Metatranscriptome431Y
F006386Metatranscriptome374Y
F006424Metagenome / Metatranscriptome373Y
F014507Metagenome / Metatranscriptome262Y
F014616Metatranscriptome261Y
F016242Metatranscriptome248Y
F018020Metagenome / Metatranscriptome237Y
F023044Metagenome / Metatranscriptome211Y
F031523Metagenome / Metatranscriptome182Y
F037231Metatranscriptome168Y
F080070Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103763_1001786All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1894Open in IMG/M
Ga0103763_1011687All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans826Open in IMG/M
Ga0103763_1013260All Organisms → cellular organisms → Eukaryota → Sar775Open in IMG/M
Ga0103763_1015159All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae725Open in IMG/M
Ga0103763_1016967All Organisms → cellular organisms → Eukaryota → Sar684Open in IMG/M
Ga0103763_1018410All Organisms → cellular organisms → Eukaryota → Sar655Open in IMG/M
Ga0103763_1021813All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus602Open in IMG/M
Ga0103763_1023568All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense579Open in IMG/M
Ga0103763_1024069All Organisms → cellular organisms → Eukaryota → Sar572Open in IMG/M
Ga0103763_1024971All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales562Open in IMG/M
Ga0103763_1025969All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae552Open in IMG/M
Ga0103763_1026268All Organisms → cellular organisms → Eukaryota548Open in IMG/M
Ga0103763_1026808All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus → Brachionus manjavacas543Open in IMG/M
Ga0103763_1030734All Organisms → cellular organisms → Eukaryota507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103763_1001786Ga0103763_10017862F000068MCETRYHEHDVEDDVVDCETIQDEKCEDVTQGYTTEKKCTKWPRQVCKTEKKQVKKYSPETECKKVPRELCGPSGCVLTPGPEECFDKKETVVQEVPEENCNLEPQRSCKHVTKLVPLLKPQEECVDIPKEVCSRSRTNPRKVQKPVVKKWCYVPTKESGLA*
Ga0103763_1011215Ga0103763_10112151F000241MTRRTLLPVVFAGAALTYVFSTTMSFVGSFRPAHCRGDFVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103763_1011687Ga0103763_10116871F014616RQETAEDKAAKEKVHQIKGEDGTFLKLKVEDCEKDPSILTTYFADYENCPEFIVQEAVEGFTRNWETRCFWYNGKFLYAIANMAAVSSGDGAERIITGDDIPQEFLENAKRIGEQALKCLPDMKVQGGGSVPMILVRTDIGCSDGQMYDKDCKWNPAEKTFFLNEIEPSSTTYFVRHLKFDCIPIYGKLYTETARKAKEQMDIAEAARKAREQTDSSAAAKLEKKRAVENADDEAYAKKARCGA*
Ga0103763_1012211Ga0103763_10122111F000241YLQIVITLPPPTQTANMTRRTLLPLVFAGAAVTYVFSSTMSFVGSFRPSTCRGDLVPARVSAEYLERCGPKDSDVPFDASAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVLKSINGVNVLTESFGKIMDMLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYQGKELKQDGQDGFAR*
Ga0103763_1013260Ga0103763_10132601F006386MGRPLSDGWKFVGMVSIFARVGFSAAWMFIANFNHSHLWNEFLAHDPDRTWPKLHRTMAFLLGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEKVHDACVEILSRGLWKSDDAETKMDKYQKRRSMLVKSRKNSAAKH*
Ga0103763_1013933Ga0103763_10139331F000241LERCGPKDADVPFSASAATGATHDVVYKKRPFGILRYQPGQGKKGAMAMEIIPKSRYPGDPQGQAFSSGVQSGWVVKSINGQDVLTEDFGKIMDLLDDEVADPRFSKSTALALDKQGGRLVQPADTPLSITYAEIPGYVYKGAALKADGQDGYAR*
Ga0103763_1015159Ga0103763_10151591F001926RDVRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYESKRIKIEKLLTLGYTTSGDP*
Ga0103763_1016967Ga0103763_10169671F003249WLANYSTQRSLTTSVDTMTYGATSLLALSALVAAASGSLLRADRAAWEPESCEELAPGVPCRKLYEHPQGSTFVGPCPTESMANPEGCAAQFEGKPDAEQCPQIYCPKALGVTMKLICGGACCPTCWAPDHVVAMDRHTSLENPVTVPPAPQAPPTCAGARCFEPVCASGFEKGFVQGNCCYSCVPGR*
Ga0103763_1018410Ga0103763_10184101F016242ILQKALLRLEDFYKKNIGKKVVLAQQTPPVQFTIYKDNAGASPVMGLLEQIIEDSKKVEAEATAGEYKSQADYETFVKDSNALIAELTAAVEAKTKATATASGESAEAKGDLESAIGELDSLAAYQADLHGECDWVLKNFEIRQKARLQEMEAIQAAKAILSGAR*
Ga0103763_1021143Ga0103763_10211431F000073MEEHANFRDICENGKGKLQWERDIPQDALDNLQNLANTDFHQNLGKIIHDIYLTAHNLFMDMPQGDHKKRAKYRFASKTLMRILPGDLKNEVEGLIAKNTMTLDLYEILGQCTWGQRSL*
Ga0103763_1021282Ga0103763_10212821F037231KTFVGGQHLRYTGTLKFFTPKHGFGYVIMDQGYDVDPSVPSELRVETDEVNAGGKQPCFMENLAVEFGIWRTKKGGYMVYNMTLPGGHPLTQDALENRISMGLQSYTGKVAIWNWRAGWGFIKCSDATMLPPRVLAKLALQVQAARQRGKNVGDDKMLYFRKADCAHTAGQNLRQGADVSFQVYIDDKGAGACDVHC*
Ga0103763_1021284Ga0103763_10212841F000020AAQTAVAQALTVLKEFYAKAGEATAFLQQQQTPPEIFDSPYKGMQAENGGVIGMLEVIESDFARLEADTKAAEATAQKEYDTFMTDSKVDKEAKTTDIEHKTAKKQDESQALNVKNEDLEGTQKELDAALAYFDKLKPSCVDAGVSYEDRVKRREDEIQSLQEALKILNGEDIA*
Ga0103763_1021813Ga0103763_10218131F080070SDLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVTSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVSSLGLGSVWSTITALGSSVSSQFIQIGTQLLFAGSQIWAQVKPVLAQLVSDLTNHAGDAVTIVAQTI
Ga0103763_1023072Ga0103763_10230721F000241PEDADVSFSASAATGATHDVVYKKRPFGILRYQPGQGKKGAMAMEIIPKSRYPGDPQGQAFSSGVQSGWVVKSINGQDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLVQPADIPLSVTYAEIPGYVYRGAALKADGQDGYAR*
Ga0103763_1023568Ga0103763_10235681F031523ARVIKHFTDKYVSARDEVERDVQNMKAFYRSQKDIPGKTKADVLKEIWAELPKYSEKPVPPLDEEMLAELAEEPATAEGEFKHSWGTADVLYKSEAIDAFGMKYLLGVFETKAEAQKAFADWNSEYEKARVEMKAEMEQWTKQEQARLDRDTSGQDRIKKVLEEARR*
Ga0103763_1024027Ga0103763_10240271F000070SLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKTSDAVRKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGVVKFAQVVGVFPGPRFDDADGLDQSEAD
Ga0103763_1024069Ga0103763_10240692F001939MKSFAGICVFLALIAGPAAAARLRQHRESPEETKLDMEYRDKDSFGNTELTPACDKIECGAYSCPTPFELKVDGTCCGYCYAPDHEVAANRHVVVNYNATGFAVEQCESAPSTCKGPGENVVRCFKPSCREGNVPHCAPGACCAMCTTR*
Ga0103763_1024774Ga0103763_10247741F000241LGRLGPKDTDVPFQPTAGTGPGAEVEFKKRPFGILRYQPGQGGKGAMVMEVIPKSRYPGDPQGQAFLAGVKGGWVVKAINGQDVQGEAFGKIMDLLDDEVADPRFSKSTAVALQEQGGRLAEASALPVKVTFGTIPGYVYKGKELTADGQDGFAR*
Ga0103763_1024971Ga0103763_10249711F014507WWTCTLSFGVPFAYLAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRIKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMFTVSFF
Ga0103763_1025969Ga0103763_10259691F004604MVRAEGTEVVKTAPDAAVDRLFEQVYMDYTSEYLKGPMYWHEDKLQGFLPDYPGTPMFKNGKMTSNATGNLKTFGSNELAFLSVLFLGIGLYGNLQFTYYDPQWPKIDAGLGFNPSYVVESFFLPISFFMHIAAYIQKQNGK*
Ga0103763_1026268Ga0103763_10262681F018020SDTLGDGTTEKVSMILSGYSSLTLEINKVPIPDPVPPPKEWVI*
Ga0103763_1026268Ga0103763_10262683F006424VIGSGRVDSVFVGNDFPELGTDLVTALSSLDVNYFSHLFLFI
Ga0103763_1026808Ga0103763_10268081F080070HAGDAVTIVAQAIASLNQVIGGAGKRAIAQRDLISTIVSSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVSSLGLGSVWSTITALGSSVSSQFIQIGTQLLFAGQQVWAQVTPVLSQLKDD
Ga0103763_1030734Ga0103763_10307341F023044IDLGAIFSEFLAGVTKPLTEIGQHFLNQGLSAVLGSLAGSRGISDLFAGLQQQIGTAVGAAQGALSGALSNLAALGSNLLDASKPHWEQLQEQLLGHGLNALGSLSETINNLHGSITGGR
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