| Basic Information | |
|---|---|
| Taxon OID | 3300002534 Open in IMG/M |
| Scaffold ID | QSAF_1001077 Open in IMG/M |
| Source Dataset Name | Coal-degrading lab enrichment microbial communities from Bowden, Alberta, Canada- methanogenic culture: QSAFCN2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | McGill University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2050 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Bowden, Alberta, Canada | |||||||
| Coordinates | Lat. (o) | 51.9740275 | Long. (o) | -113.8051889 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F069913 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Draft06538 | F069913 | N/A | LTGEEYNLLEEELINSGLDNKSFLTSRWIKLHKYYYWKRKSRDLKEDSLQAEGQFLPIDVHSGGLIKPSKRGKGLKQRFITRGEIEIELRTPSGAELRIRGIMDSLMVSTIIASTGGRRNV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |