| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000285 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052808 | Ga0031079 |
| Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159005010 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 198125826 |
| Sequencing Scaffolds | 23 |
| Novel Protein Genes | 24 |
| Associated Families | 22 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct89S11 | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 6 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 4 |
| All Organisms → Viruses → Predicted Viral | 2 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018385 | Metagenome | 235 | Y |
| F033081 | Metagenome | 178 | Y |
| F040149 | Metagenome | 162 | N |
| F043235 | Metagenome | 156 | N |
| F043991 | Metagenome | 155 | N |
| F045567 | Metagenome | 152 | N |
| F047508 | Metagenome | 149 | N |
| F051211 | Metagenome | 144 | N |
| F051213 | Metagenome | 144 | N |
| F053092 | Metagenome | 141 | N |
| F063777 | Metagenome | 129 | N |
| F063778 | Metagenome | 129 | Y |
| F066860 | Metagenome | 126 | N |
| F067846 | Metagenome | 125 | Y |
| F071329 | Metagenome | 122 | N |
| F076191 | Metagenome | 118 | N |
| F077403 | Metagenome | 117 | N |
| F084362 | Metagenome | 112 | N |
| F090517 | Metagenome | 108 | N |
| F095630 | Metagenome | 105 | N |
| F103434 | Metagenome | 101 | N |
| F105378 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C7125065 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct89S11 | 685 | Open in IMG/M |
| C7128379 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 695 | Open in IMG/M |
| C7179579 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 925 | Open in IMG/M |
| C7238749 | All Organisms → cellular organisms → Bacteria | 2366 | Open in IMG/M |
| SRS023595_Baylor_scaffold_16816 | All Organisms → cellular organisms → Bacteria | 21769 | Open in IMG/M |
| SRS023595_Baylor_scaffold_16918 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 5009 | Open in IMG/M |
| SRS023595_Baylor_scaffold_21165 | All Organisms → cellular organisms → Bacteria | 9960 | Open in IMG/M |
| SRS023595_Baylor_scaffold_44064 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 7612 | Open in IMG/M |
| SRS023595_Baylor_scaffold_44787 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2749 | Open in IMG/M |
| SRS023595_Baylor_scaffold_49345 | All Organisms → Viruses → Predicted Viral | 2892 | Open in IMG/M |
| SRS023595_Baylor_scaffold_57331 | Not Available | 71382 | Open in IMG/M |
| SRS023595_Baylor_scaffold_70385 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 3102 | Open in IMG/M |
| SRS023595_Baylor_scaffold_8662 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 19043 | Open in IMG/M |
| SRS023595_Baylor_scaffold_86783 | All Organisms → Viruses → Predicted Viral | 1673 | Open in IMG/M |
| SRS023595_Baylor_scaffold_9005 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 16847 | Open in IMG/M |
| SRS023595_Baylor_scaffold_92753 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 7971 | Open in IMG/M |
| SRS023595_Baylor_scaffold_93060 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 1224 | Open in IMG/M |
| SRS023595_Baylor_scaffold_93988 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 6799 | Open in IMG/M |
| SRS023595_Baylor_scaffold_94201 | Not Available | 1441 | Open in IMG/M |
| SRS023595_Baylor_scaffold_96085 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 12169 | Open in IMG/M |
| SRS023595_Baylor_scaffold_97949 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 29006 | Open in IMG/M |
| SRS023595_Baylor_scaffold_98511 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 8551 | Open in IMG/M |
| SRS023595_Baylor_scaffold_98934 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 11251 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C7125065 | C7125065__gene_313049 | F043991 | MSKKNPSIVDYFDLNGDLNEEAYEFEEVKLEDYIDKRSNIKPSWIGKYSHQMHFDLDDGTEVSFYKGRNIIYADILFSGGIRTILFKCRQKKNLTRFISRVLELSQGEPSNIHPDFRA |
| C7128379 | C7128379__gene_314766 | F066860 | MTTKKQKLQKQQAIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI |
| C7179579 | C7179579__gene_342158 | F063777 | LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQSLILEDNQLKNQLISFDKNTGKIMVLADIKDFFWLEFDSETKTINGYNNKEQIE |
| C7238749 | C7238749__gene_379330 | F051211 | MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDRSTYDIDPSIDIRLAPTLTIAHWDGTSSTATMASLKHLRIYRPHSLHKRILSRLRRKLFRGNPKEFYTAIDKWLADTRAHRSS |
| SRS023595_Baylor_scaffold_16816 | SRS023595_Baylor_scaffold_16816__gene_14456 | F103434 | VVEVTLAVIKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR |
| SRS023595_Baylor_scaffold_16918 | SRS023595_Baylor_scaffold_16918__gene_14557 | F090517 | MNRRIFSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEHKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYPRDVQVRYYYTITDRILTLKAQVNRELHPPMDQNTWYLIRKEPSLLVFQANAGNPDREATLTLRRKL |
| SRS023595_Baylor_scaffold_21165 | SRS023595_Baylor_scaffold_21165__gene_18297 | F051211 | MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHHSS |
| SRS023595_Baylor_scaffold_44064 | SRS023595_Baylor_scaffold_44064__gene_40615 | F095630 | MRYSPLYKTSKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDIILTAKTYGDTCYMDAELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDDLMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVSYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVAVRENYTVYERGDQWSEASLSVGYRIFLGLAKEDKRIASQLKHEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI |
| SRS023595_Baylor_scaffold_44787 | SRS023595_Baylor_scaffold_44787__gene_41310 | F033081 | MYPPDLMVVHRPRKGVMAWLFRRAMPRDTRPTFVWPKLAVEIGNAGYFGRRWLTAIATVLIIVTIATIKVLLMIPGLDSSVVELLTSIFETFLPARWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATRCGVYDTLLLFALLEEQAFRSGSEKWSWRERVRASVCFGLLHITNIWYNFSAGIALSVTGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAATAVLYAAISIIKVL |
| SRS023595_Baylor_scaffold_49345 | SRS023595_Baylor_scaffold_49345__gene_45974 | F067846 | MESLQAQWERKPFNDWDKQCGKEDDHNRAIEMEIEAIKEDIANGDDDAICLFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMDEDRLKQLEEDYRKGFILND |
| SRS023595_Baylor_scaffold_57331 | SRS023595_Baylor_scaffold_57331__gene_54762 | F105378 | MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNVKVINGFFSGNSQATVIRNTKQNENGEFIRPIFVDVQCTEYTGGDLGEISVTYTTEAINVYNTGSFTGSFQCMIVYPLGSANR |
| SRS023595_Baylor_scaffold_70385 | SRS023595_Baylor_scaffold_70385__gene_69861 | F095630 | MIYSSLYKTVENNGLLAHIYEHLLAQYVMKSLQGRGFFISSDIILTAKTYGDTCFIDAELYNPAAQKAYGEALRLFDEWDIPGDAALRTAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRIPYVKYGRKSKNIFPEYVLEYSVDEKYIQSPIDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCDNLQAALVRCSHNYEQVLLGRDTLNSILGGCVIGGKGWLRIADNRRIQQMLAVIELDVYSI |
| SRS023595_Baylor_scaffold_8662 | SRS023595_Baylor_scaffold_8662__gene_7164 | F047508 | MLGHRLVEGCVKYPYLRDLGEHLRHSLDTEDVGWVVKRSKLCALMEHIYHLRGDTYALSKALCTVYEAVTDGVNLIEGLYEVLFFENVEDNFYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP |
| SRS023595_Baylor_scaffold_86783 | SRS023595_Baylor_scaffold_86783__gene_91307 | F071329 | MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNSNGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVKAVKEARDHIEIED |
| SRS023595_Baylor_scaffold_86783 | SRS023595_Baylor_scaffold_86783__gene_91308 | F018385 | GLHPWSLSLTIGVLGLMVEFVNRWDPYAEVPIETHRDPVKDDPLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVN |
| SRS023595_Baylor_scaffold_9005 | SRS023595_Baylor_scaffold_9005__gene_7567 | F045567 | VHTGTHRVEDALLPIDGDILTPRDGTYIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHG |
| SRS023595_Baylor_scaffold_92753 | SRS023595_Baylor_scaffold_92753__gene_101637 | F053092 | MQSDQGLILCLTHSLLVLGALILEPAEMEDTMDDHTVQFFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIKKVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK |
| SRS023595_Baylor_scaffold_93060 | SRS023595_Baylor_scaffold_93060__gene_102195 | F063778 | MPETISEGAKQQLLQQLQDALGLVKDADTSTHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED |
| SRS023595_Baylor_scaffold_93988 | SRS023595_Baylor_scaffold_93988__gene_103992 | F084362 | MNCTFTVHWSDEKNKPHAKTYATEVDAKRAKKWLLEHGVRSVDIAVKINNKPASSLKDDKPSDTEAEQKGFWWQE |
| SRS023595_Baylor_scaffold_94201 | SRS023595_Baylor_scaffold_94201__gene_104445 | F077403 | MKITMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWHREDNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQNQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM |
| SRS023595_Baylor_scaffold_96085 | SRS023595_Baylor_scaffold_96085__gene_108226 | F043235 | MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHLREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH |
| SRS023595_Baylor_scaffold_97949 | SRS023595_Baylor_scaffold_97949__gene_112649 | F076191 | MKIIAESPAEEALLWRIKALSDELVNQDNRCTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDDYYDNPTTYIRSAHHNQELKDVIHLLILAGGNEIPSNHYRSLSNA |
| SRS023595_Baylor_scaffold_98511 | SRS023595_Baylor_scaffold_98511__gene_114089 | F051213 | MNLYKILGALILALSCVFTSCDWVDNEPTIEGDIDKYFDSNAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGKDRSVLFATRNDDKQAHLPDMIVTQGAK |
| SRS023595_Baylor_scaffold_98934 | SRS023595_Baylor_scaffold_98934__gene_115472 | F040149 | VADEGAKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHYDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |