| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300034759 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118431 | Gp0324329 | Ga0310139 |
| Sample Name | Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-4 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 182022504 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → planetary subsurface zone → fracking liquid |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | N/A | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022008 | Metagenome / Metatranscriptome | 216 | Y |
| F038199 | Metagenome | 166 | Y |
| F082560 | Metagenome | 113 | N |
| F088079 | Metagenome / Metatranscriptome | 109 | N |
| F099151 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0310139_003708 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 6489 | Open in IMG/M |
| Ga0310139_003824 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales | 6288 | Open in IMG/M |
| Ga0310139_014610 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer | 1923 | Open in IMG/M |
| Ga0310139_017106 | All Organisms → Viruses → Predicted Viral | 1672 | Open in IMG/M |
| Ga0310139_030143 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1009 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0310139_003708 | Ga0310139_003708_5766_6119 | F022008 | MTVSEIEMLREALADLSKQVQALSEDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELRTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLMMKLLGD |
| Ga0310139_003824 | Ga0310139_003824_762_1166 | F099151 | MRFREETFKENGQIIKKYYIDDKEVTQDVYYNLTDELYENTKLKQDEHTEEICDCEECQYYLDLIHAIKESDYSEALEILRQEIEFRVQEAYMEGQHVLANELGNSLLKHAVKLEDELENLYENGSFDEYNEDG |
| Ga0310139_014610 | Ga0310139_014610_867_1121 | F038199 | MEYTQAEFLQIIQQYNSTDRRVIKTNLKRIMNIYNIKPADIAALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFLK |
| Ga0310139_017106 | Ga0310139_017106_1_297 | F082560 | MSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIRGRTWVVEVKVPGAKPRVPRAKRNEVSQEMQEWLTMGATMLQAKTLYDWQNAGAVALVA |
| Ga0310139_030143 | Ga0310139_030143_2_229 | F088079 | MLTEKAIWLENVPFRNIDGAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLDIFIHICEIYKVDIT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |