NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034524

3300034524: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-2



Overview

Basic Information
IMG/M Taxon OID3300034524 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118431 | Gp0324336 | Ga0310146
Sample NameFracking water microbial communities from deep shales in Oklahoma, United States - K-7-2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size0
Sequencing Scaffolds5
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → fracking liquid
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)N/ADepth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075996Metagenome / Metatranscriptome118N
F077200Metagenome / Metatranscriptome117N
F088079Metagenome / Metatranscriptome109N
F093744Metagenome / Metatranscriptome106Y
F105007Metagenome100N
F105008Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0310146_00103All Organisms → cellular organisms → Bacteria134503Open in IMG/M
Ga0310146_00146All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales112177Open in IMG/M
Ga0310146_00757All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales36142Open in IMG/M
Ga0310146_01458All Organisms → cellular organisms → Bacteria19460Open in IMG/M
Ga0310146_01869All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia14777Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0310146_00103Ga0310146_00103_119648_120598F105007MEDADVLEGIYRKFCEKGDISYRESDIVFRIAQRFFSRKSYLSLKDVVPKWYEKVKSKILNGGRGVFMHTVPLGSAEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVNNKNAYRFLRADTLRRLGNFVYIDLDGIKTREFDIACAYRYEMKEKNCAVDRLAQVYAAVFLELENAGIKFLTCSNRAGYAYGYFDELGVFADEKDAERIEGVLKTSDCIAESLKGAVREFSVRDLYLFSPAKDCELSMNDPYFRKLVKSHVSQFFPEKRKDAVEEEEWLDITR
Ga0310146_00103Ga0310146_00103_124162_124986F105008MTAIYDIAREEMTKKGDISLHTADGLFEAFSLIMQFKERVEFLPWYLTVLRETRKGRTGNFTTTVPFVWKKGDVFSAVRDILETLPQRCRTEEILGPVPVVSAPGCAVRNGYAHLSRAGMFDLLFPDHDILFEIPCETGGSFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRESRDVFAELLRLDEELLKIALLEKGAEISGSFPKMFPDCDWLETCDAGTVLNLDGRRYLVGRTPEEALAQGFLSCIRYVKDRLSDDGYLDIIR
Ga0310146_00103Ga0310146_00103_3245_4006F077200MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQGEKIKPVVYKLNEKIFKTVEIFKFPEEEPDTEKGEINIVDIDR
Ga0310146_00103Ga0310146_00103_54465_55145F075996MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGDLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFKDRICTFTGLYAGKDGLFANGKKVGSFKDISGIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLLSERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR
Ga0310146_00146Ga0310146_00146_18016_18276F088079MLIEKAIWLENVPFRSIDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310146_00757Ga0310146_00757_34169_34429F088079MLTEKAIWLENVPFRNIDGAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLDIFIHICEIYKVDITFFKSNVVSTK
Ga0310146_01458Ga0310146_01458_2711_2971F088079MLTEKAIWLENVPFRNVDEAIGRQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310146_01869Ga0310146_01869_4635_4811F093744MSLKIGDRVEVNYPVDDFPGHVGIVRDIKETELGTLVICYWAFLDKEIGFFEKSLDLV
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