NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034521

3300034521: Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-2



Overview

Basic Information
IMG/M Taxon OID3300034521 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118431 | Gp0324327 | Ga0310137
Sample NameFracking water microbial communities from deep shales in Oklahoma, United States - M2-7-2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size208117037
Sequencing Scaffolds12
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → unclassified Dysgonomonadaceae → Dysgonamonadaceae bacterium1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin0281
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → fracking liquid
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)N/ADepth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014002Metagenome / Metatranscriptome266Y
F023320Metagenome / Metatranscriptome210N
F027161Metagenome / Metatranscriptome195Y
F030054Metagenome / Metatranscriptome186Y
F031881Metagenome / Metatranscriptome181Y
F038199Metagenome166Y
F044252Metagenome / Metatranscriptome154Y
F049017Metagenome / Metatranscriptome147N
F063614Metagenome / Metatranscriptome129Y
F067650Metagenome / Metatranscriptome125N
F082560Metagenome113N
F084273Metagenome / Metatranscriptome112N
F087074Metagenome / Metatranscriptome110Y
F088079Metagenome / Metatranscriptome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0310137_000016All Organisms → cellular organisms → Bacteria330265Open in IMG/M
Ga0310137_000734All Organisms → cellular organisms → Bacteria27734Open in IMG/M
Ga0310137_003328All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → unclassified Dysgonomonadaceae → Dysgonamonadaceae bacterium8138Open in IMG/M
Ga0310137_007782All Organisms → Viruses → Predicted Viral3698Open in IMG/M
Ga0310137_009493All Organisms → cellular organisms → Bacteria3078Open in IMG/M
Ga0310137_009632All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3033Open in IMG/M
Ga0310137_012233All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin0282430Open in IMG/M
Ga0310137_025833Not Available1227Open in IMG/M
Ga0310137_043410Not Available760Open in IMG/M
Ga0310137_049688All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium667Open in IMG/M
Ga0310137_054557Not Available612Open in IMG/M
Ga0310137_066277Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0310137_000016Ga0310137_000016_106486_107265F084273VKSIIRLLVVAALLLAAGGVDAAAIDKDILACGHNIGKLTLSDPVAYSTTTQGGVTVSGQFAGNYPPLRNGVEIRWVQLISTSHPLNTNAAANTPYFDPGELDMTGDNDPFYWNTTLKAKDGNDYPQYYYVNYQINAGKGIKFFDEPKRSKADAPVSWLAELNLVCWETGTKNFSVLWTGTYGFNIAQNGNVTVNGWNELANPAWLTQARLTQYFPGWSMSDACKNCLVPEPVFMQMGALLGMSGLGTLAARRARRRSG
Ga0310137_000734Ga0310137_000734_13477_14031F049017MAITKYTKTCGKNIPGSSRIFFSEAANITSMTVTDGQISALTMATSTKFAEFAADIDSIKMTVEGKGSTSYSKNLKLEAKFSKKTKELIAAESALADAVACGVAVIRIDNNGYAWLSGYTLNDKYKRAYTKITSTFDSGTKPSDENTAAYTITLEAEGFEDEMPFDATLTASIIGGTATFIDYN
Ga0310137_003328Ga0310137_003328_43_303F088079MLTEKAIWLENVPFRSIDETIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310137_007782Ga0310137_007782_3269_3523F038199MYYTQAEFLNIIKQYSSTDRKVIKSNLKRIMDIYNIKPADIAALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFLK
Ga0310137_009493Ga0310137_009493_811_1167F082560MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELRERSPKEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGFNM
Ga0310137_009632Ga0310137_009632_1174_1434F088079MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDIFIHICEIYKVDITFFKSNVVSTK
Ga0310137_012233Ga0310137_012233_1634_2428F067650MNITIRFVFKRRIDTPPQGSLPFGFTQLRLVDETFEVLDDNFSVNIDNENVNDFSKAIDSKFTKTLKIAGTQKAIEFFKEYYEVRYEGESDYNFLFNSRTGEHCTIYVDGIEVMRGVALLTGITKKNNIVIFELQVINDVKDILNEFKNLYIDELDELNYTWNFTNVRNLLHTIIDGTFTGVCMADGMCVSQKYISSENAVRTAIDMSKIPIAGNVKRLIDKAFEKIGVEYQSEFFRNNQVFSDLWLCNNKEENLGIWGDADKML
Ga0310137_012233Ga0310137_012233_244_720F023320MKQYKALTFEVDLSGLGKEQWIQAELDYDTIAQKIIDTLIDVMREKDVEASSNLIQSLEPESKNGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFIPASKKHALSIAKWLEFRGLATEFTTLADAYRVATSTKIKGIRGRKFVEEFEKEIDKIEIL
Ga0310137_012233Ga0310137_012233_717_1637F087074MIQGVYVYRKGGEVIGSPFPAFDDLFLQIDSDNTSAGLYFVVDFVNEYSGKKVTIKLYPKIGQNTVETYISQILRNLFNNIFFYYRLKITVKEYDESGYVNNLIMSFIVIPSIYNSFLPPLKNYYFYYYDSADYDILSSRGITLYDDDFNELSDEISIMTTLNNIYKETLDPPFKKIITITHKQVCEPLLKLKYLNLHTGYYDTFGGWYLKQDTVNIEKQIYNRQTLMDTGTRQALPELDNEFTLISYDLPVDQANYIAKSIIMSPKTFLIDTNGNEMECVVMNKNYTDALSVVNVFANINLNIRL
Ga0310137_025833Ga0310137_025833_270_578F027161MNEYINLIIENLNISYVCSVMLIGYIFTKSKLISILKIQKRWLILTIGLLVAVFYYFVIKINLDILFFSFITAQFLNLYVSEYLIDYLIKRIVSLTNKTNEK
Ga0310137_025833Ga0310137_025833_50_277F014002MDFNFNISELISIIALLIAIIGGYVNTKIQITKLVEENKTITEKINKLDKKLSEICSKVDKIRLNLAKKGLNGDE
Ga0310137_043410Ga0310137_043410_32_760F031881MNSYQFTINKKLSTVRVGENKFKFTIDKSGATTINITQDKIEDVIYSVFDNSEYLDLVRIITNIKGTQQVPKIFLQGTGGVGNGLVDSQGCGFVDTTDLVLIDVPISVTKKRMGLELCLDDLVNTTLEVHISSGARNESLDIEDALLAYFTQVLRKNIQNYVFADSVDGILNKILTSGTAVTTTASSDLGKLYDLFEALPADWKNSTEASPIIFISPNLMTGVRSEIITSSAPITSSIEVVNN
Ga0310137_049688Ga0310137_049688_483_665F063614LVKTGFEKVNVLGIEDAQNDLWQIYDICQELMAFWDSELTEERIDELEEIIAELPLLKRV
Ga0310137_054557Ga0310137_054557_422_610F044252MAQTCALIAPVQPILQRVSCSNETLTNAPKHYENAPKHEFRVQWGGSRMFVAKNSDASSWHEL
Ga0310137_066277Ga0310137_066277_3_509F030054SIKKKNQIINTNKELISSYKERINSSNLAIDSLQNVIKQAKKVDTIIKYRYKQKIDSIYVYNYDDYVSFYDTFLHTNLLKTDTFICFDSMSVQKLTTKIIECERDSELLANCYIQNNLYSNIISVQDSVISLKDSVNASLEDMYKQKVKKIRRQRNVATGVAFMELLIL
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