NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033178

3300033178: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_05-R1



Overview

Basic Information
IMG/M Taxon OID3300033178 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356201 | Ga0334885
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_05-R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size527821952
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae1
Not Available4
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010686Metagenome / Metatranscriptome300Y
F022008Metagenome / Metatranscriptome216Y
F025315Metagenome202Y
F066219Metagenome / Metatranscriptome127Y
F070092Metagenome123N
F076577Metagenome118N
F079824Metagenome / Metatranscriptome115N
F080090Metagenome / Metatranscriptome115Y
F082560Metagenome113N
F083694Metagenome112Y
F093482Metagenome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334885_1003130All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae15807Open in IMG/M
Ga0334885_1021066Not Available3397Open in IMG/M
Ga0334885_1058650All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1432Open in IMG/M
Ga0334885_1066352All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga1290Open in IMG/M
Ga0334885_1077752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1130Open in IMG/M
Ga0334885_1079777All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium1106Open in IMG/M
Ga0334885_1091031All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC991Open in IMG/M
Ga0334885_1099233Not Available922Open in IMG/M
Ga0334885_1131181Not Available730Open in IMG/M
Ga0334885_1138624All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium697Open in IMG/M
Ga0334885_1174882Not Available572Open in IMG/M
Ga0334885_1176718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium567Open in IMG/M
Ga0334885_1183760All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis549Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334885_1003130Ga0334885_100313021F066219MRKLLAIFLMLVIACIAFSNIVEFFEGIPPVVRFAVGGAIAIYGLSWAYTWLFDPIVVVADNKYGAFNFGPFIVVDTYLWYDASESSRNLVLNHEYVHYIQHALYGPILSLTYPVCYWYSTLKSGDQWSANYWEQQAISLATNDPPAWKPALILELGGN
Ga0334885_1021066Ga0334885_10210662F082560MYAVFRCAGIPVDGGIGVTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKFVRAGYPEEMQKWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYFGYKIGGKYYGRIGNA
Ga0334885_1022569Ga0334885_10225696F066219MKKVFLVFLILCIGCLIHANIVEFFESIPPVIKYAVGTAITVYALSWAYSWVFDPIIIITPNGYGAFNFGPFIVIEPDIWYSNNTKWKNIVLNHEYTHYVQHAVYGPILSISYPILALYSNIKSGNQWDDNYWEIQANLASDEPPSWKPLVIWEW
Ga0334885_1058650Ga0334885_10586501F080090KLCTPEAPVHSWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0334885_1066352Ga0334885_10663522F070092MAINDRLKPVMELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVSELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334885_1077752Ga0334885_10777522F025315MQNYLLVTFEILLVVVVPLLVLYLKGNWPLRKVIPSLVIIPVIWYFTYAPIHELSHAAGTYLVGGKVIAYRLIPRFWLGEFSGAWATPGGFTQSWQQLTSSAFPYLLDIVCLVVAIFVLRRRFSRNPFLAGLVFMLVCLRPAFDIVGESIGFLTGWRGDLYFIQLIAGSFALWSLILLSIGLSGYLISSTMRHVIS
Ga0334885_1079777Ga0334885_10797772F079824MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMIMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSACSVDRCEKVHIIYLYMHDPYQYEPITHIRADVVGQLYDSNEIVAVPPK
Ga0334885_1091031Ga0334885_10910313F083694MEEIERLKNRQLAKLLTHLERTGQLTVELKQTLKRAYRFAFEDVEALMQELGKENKDGNPKD
Ga0334885_1099233Ga0334885_10992333F066219EFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSFVIELE
Ga0334885_1131181Ga0334885_11311811F070092MAINDRLKPVMELLETNRQKIDLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVSELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDG
Ga0334885_1138624Ga0334885_11386242F093482VEERTLDELWERIEKEDPVLWAQMEKFYGPMSKKILLMKWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHG
Ga0334885_1174882Ga0334885_11748822F022008MCIPCIERGMAMTVTEIEMLREALMDLSKQVQALSEDSRTSFGRIYDRLTTIETQMSERECQFRKFEKALENHETRIRSVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLIVQILG
Ga0334885_1176718Ga0334885_11767181F079824SPHNRGNHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSPCSVDRCEKVHIIYLYMHDPYQYEPIVHIRADVVGQLYDSNEIVAVPPKRVRKRK
Ga0334885_1183760Ga0334885_11837602F010686LNSYDQATKGIWRMSWHQKTLKGVEDCDKLGGVVKRALIPRSLNWRVLNS
Ga0334885_1197695Ga0334885_11976952F076577MNFWPKSKVIALMEIAFHFGAISYAPSNGKKRREMWKEFKANAIDKRLKHINPDPRCTHPVNLDVIDYCWGYAEKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
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