NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033174

3300033174: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_04-R1



Overview

Basic Information
IMG/M Taxon OID3300033174 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356198 | Ga0334882
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_04-R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size521743922
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Atribacterota2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin2762
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
Not Available6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003987Metagenome / Metatranscriptome458Y
F004383Metagenome / Metatranscriptome440Y
F005744Metagenome / Metatranscriptome391Y
F022008Metagenome / Metatranscriptome216Y
F025315Metagenome202Y
F031138Metagenome / Metatranscriptome183Y
F034940Metagenome / Metatranscriptome173Y
F051061Metagenome / Metatranscriptome144N
F059692Metagenome / Metatranscriptome133N
F061390Metagenome / Metatranscriptome132Y
F066219Metagenome / Metatranscriptome127Y
F069913Metagenome / Metatranscriptome123Y
F071725Metagenome122N
F079824Metagenome / Metatranscriptome115N
F080090Metagenome / Metatranscriptome115Y
F082560Metagenome113N
F092107Metagenome / Metatranscriptome107Y
F093482Metagenome106N
F096294Metagenome105Y
F099347Metagenome / Metatranscriptome103N
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334882_1009525All Organisms → cellular organisms → Bacteria → Atribacterota6485Open in IMG/M
Ga0334882_1015553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium4353Open in IMG/M
Ga0334882_1026572All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1662778Open in IMG/M
Ga0334882_1031327All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia2415Open in IMG/M
Ga0334882_1031581All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium2398Open in IMG/M
Ga0334882_1033279All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon2287Open in IMG/M
Ga0334882_1033307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium2286Open in IMG/M
Ga0334882_1036783All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon2100Open in IMG/M
Ga0334882_1040557All Organisms → cellular organisms → Archaea1931Open in IMG/M
Ga0334882_1045410All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin2761755Open in IMG/M
Ga0334882_1052667All Organisms → cellular organisms → Bacteria → Terrabacteria group1542Open in IMG/M
Ga0334882_1060474Not Available1370Open in IMG/M
Ga0334882_1063208All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon1321Open in IMG/M
Ga0334882_1069565Not Available1217Open in IMG/M
Ga0334882_1076540Not Available1120Open in IMG/M
Ga0334882_1095542All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276926Open in IMG/M
Ga0334882_1106259Not Available846Open in IMG/M
Ga0334882_1119510All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium766Open in IMG/M
Ga0334882_1121522All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium755Open in IMG/M
Ga0334882_1140253All Organisms → cellular organisms → Bacteria → Atribacterota670Open in IMG/M
Ga0334882_1175290Not Available555Open in IMG/M
Ga0334882_1176919Not Available551Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334882_1009525Ga0334882_100952513F061390MVIISKEEAERLDRLVAQFGQRTVMEALEAKMMGNWSVIYFPDVDSWEVSDYGDRNFVIKDGGKCNCGKGFGKNGSCIHQALVELKKWDLEDELSVTE
Ga0334882_1015553Ga0334882_10155531F092107FLHIPEEWGEVLMITLSNGREIEYDWSAISQKEWRVLIDKETDPDTNDIIVGKLVGMSADELGDLNPIDYRKIAIGIWESFKKEADLNDSKN
Ga0334882_1026572Ga0334882_10265727F003987MIPALPCGTFSDGDTLAGAFYVAAFEDGDRTHHVGEYRIETLVRALRALQACGYDDVEIGSAEQGGKQLLLLIGLDGEARFGDRQLGCIAVAPVEVE
Ga0334882_1031327Ga0334882_10313273F069913MTLEEYEQLEQDFLSSSTDIRSFLQSRGVTHHKYYYWKRRSRELKESAIVSEGQFLPIDLHSGSLIKPSKRGKSTKQPLIGQGEIEIELRTPSGAEFRIRGIMDSLMLSTIIASTSGRRN
Ga0334882_1031581Ga0334882_10315814F071725MKTLLNQTESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFATDEEIKAIREKWQRKEINEVGLFHELEKLAKVESLPE
Ga0334882_1033279Ga0334882_10332791F034940MGNDCWYYRAQYAGMTKVCMRQSIVECGQIKRFGLCPIPPDSEAWRRCGFAIGQHEIP
Ga0334882_1033307Ga0334882_10333072F079824MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRKVISNYKTVFSEYIPIEEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSPCSVDRCEKVHIIYLYMHDPYQYEPITHIRADIVGQLYDSNEIVAVPPKRVRKRKKKEDE
Ga0334882_1036783Ga0334882_10367833F034940MGNDCWYYRAQYAGMTKVCMRQSIVECGRIRRFCLCPIPPDSEAWRRCGFAIGQHEIPMMVEE
Ga0334882_1036783Ga0334882_10367836F005744MDEMFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWEGLLRLHEVIHDRIALEGRVCETCGTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE
Ga0334882_1040557Ga0334882_10405574F080090LGSLLSERKTKKWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0334882_1045410Ga0334882_10454103F059692MDKETEQLILKKLQLDYLGLHAILTDLEKIISALVVDLDPRVNEIQRIQDQIRVYLREP
Ga0334882_1045410Ga0334882_10454105F099347MNLQEFTEHFEAFITYIEEAWEQKDLEILKAIVSDCEDFINAHGYQFKCYSMDSKSWKELYKKNREKRKKIADGMCEFCGRKKDVHCHHLIKRGKLNLYNDIRLLRMLCADCHQLFH
Ga0334882_1052667Ga0334882_10526673F025315LLVTFEILLVVVVPLLVLYLKGNWPLRKVIPSLVIIPVIWYFTYAPIHELSHAAGTYLVGGKVIAYRLIPRFWLGEFSGAWATPGGFTQSWQQLTSSAFPYLLDIVCLVVAIFVLRRRFSRNPFLAGLVFMLVCLRPAFDIVGESIGFLTGWRGDLYFIQLIAGSFALWSLILLSIGLSGYLISSTMRHVISFSKHEISQNTI
Ga0334882_1060474Ga0334882_10604743F051061MSLLDKLEERSKKRERKSLFIPELEETVYWYPMTAGERQRIMNAAGFKWARDAVQMDNAKYKASLIIEKLEDKDGKKIFSNTPEHKDLLINKIDDEILTRIVSAIDPSKTEEQQIEEAKN
Ga0334882_1063208Ga0334882_10632084F031138MTKRTNYVGPCATACKSGAGTGKVSTVFGSITVAATEHADREAGLPGRVDRTMIYCHSCGCETTADRICPACAEALGERCRVHRVRYVEDLPVSVLEEMQVERGRR
Ga0334882_1069565Ga0334882_10695654F022008VQALSEDNRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD
Ga0334882_1076540Ga0334882_10765401F066219MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVINPYLWSEAPESSRNIVLNHEYVHYIQHALFGPILSLSYPIFSAYSILKTGNQWDANPWELQAIRISDTSKPD
Ga0334882_1095542Ga0334882_10955421F099347MNLGDFIENFEAFITYIEEAWEQKDLEILKAIISDCKDFIHTKGHQFKCYSADSKTWQKLFDRNRQTRAELSKGMCEWCGKKKGVHCHHLIKRGRLVLYNDVRLLRILCADCHRLFH
Ga0334882_1106259Ga0334882_11062593F082560IPVDGGIGVTEKSIVKKIQEWFKSKGGVCHKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKFVRAGYPEEMQKWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYFGYKIGGKYYGRIGNA
Ga0334882_1119510Ga0334882_11195101F079824MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSACSVDRCEKMHIIYLY
Ga0334882_1121522Ga0334882_11215222F093482VEERTLDELWERIEKEDPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWFIQSRLRKHGGICLHEHKIRSRA
Ga0334882_1140253Ga0334882_11402532F096294VNKEIPGKIGEYEDNYIVEMSNSIESLKTKHYWLITQEQYEAELKKAYFSGWEDRNDCELREIIHKRKATREDYFKWFMEEKKRVNSKAIFEDDDGQPD
Ga0334882_1175290Ga0334882_11752902F004383MACDCESPCRECKGNGSECGMDPAECGHAVLPSSDNLLERAFMARVRADEYAQELNRLQKEFDARPDVLDLKRRIERCEEVRRQCIEQAKAAGISKQGNYLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDC
Ga0334882_1176919Ga0334882_11769191F103496WVIEMPFADGVRKLPLTKLIALCFTMFVCILIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHNLNVRKGEKS
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