NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033170

3300033170: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R1



Overview

Basic Information
IMG/M Taxon OID3300033170 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356200 | Ga0334884
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size576157768
Sequencing Scaffolds17
Novel Protein Genes21
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii1
Not Available4
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga1
All Organisms → cellular organisms → Bacteria → FCB group1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium1
All Organisms → cellular organisms → Bacteria → Atribacterota1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin2761

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001849Metagenome / Metatranscriptome626Y
F003987Metagenome / Metatranscriptome458Y
F004383Metagenome / Metatranscriptome440Y
F005744Metagenome / Metatranscriptome391Y
F039153Metagenome / Metatranscriptome164Y
F054061Metagenome / Metatranscriptome140Y
F059692Metagenome / Metatranscriptome133N
F066219Metagenome / Metatranscriptome127Y
F070092Metagenome123N
F071725Metagenome122N
F075034Metagenome / Metatranscriptome119Y
F077264Metagenome / Metatranscriptome117Y
F079824Metagenome / Metatranscriptome115N
F080090Metagenome / Metatranscriptome115Y
F093482Metagenome106N
F093892Metagenome106Y
F099347Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334884_1002316All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales24633Open in IMG/M
Ga0334884_1037691All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia2221Open in IMG/M
Ga0334884_1041868All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii2026Open in IMG/M
Ga0334884_1044563Not Available1915Open in IMG/M
Ga0334884_1051551All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga1681Open in IMG/M
Ga0334884_1053645All Organisms → cellular organisms → Bacteria → FCB group1626Open in IMG/M
Ga0334884_1059559All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon1482Open in IMG/M
Ga0334884_1064643Not Available1380Open in IMG/M
Ga0334884_1066730All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon1342Open in IMG/M
Ga0334884_1082368All Organisms → cellular organisms → Bacteria1118Open in IMG/M
Ga0334884_1088953All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium1047Open in IMG/M
Ga0334884_1093443All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661003Open in IMG/M
Ga0334884_1109359All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium876Open in IMG/M
Ga0334884_1109807All Organisms → cellular organisms → Bacteria → Atribacterota873Open in IMG/M
Ga0334884_1130313All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276753Open in IMG/M
Ga0334884_1138180Not Available716Open in IMG/M
Ga0334884_1158002Not Available638Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334884_1002316Ga0334884_100231625F039153MLYSVITPEREKKYHTEVKFFNNSHGARRLNFSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDRPKESELLVVDLIQIIANGQAYLVAIDTLGPSENHLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEHNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERS
Ga0334884_1019246Ga0334884_10192462F066219MKKVFLVFLILCIGCLIHANIVEFFESIPPVIKYAVGTAITVYALSWAYSWVFDPIIIITPNGYGAFNFGPFIVIEPDIWYSNNTKWKNIVLNHEYTHYVQHAVYGPILSISYPILALYSNIKSGNQWDENYWEIQANLATDEPPSWNPAFVWEW
Ga0334884_1037691Ga0334884_10376913F039153MKYTVMTPAATKQYNTTVLFLNNSHGARRLNFSPLHKEIKKWAKHQGYSAKLYLRSAAIECNNPDLPKESELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEYNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERA
Ga0334884_1041868Ga0334884_10418684F080090ALWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0334884_1044563Ga0334884_10445632F005744MDEMFEIIKAGAPDGPPEQALYRIQQTYPDGSGGRLNVDWDGLRRLHGLIHDRIALEGYACETCDTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE
Ga0334884_1044563Ga0334884_10445636F054061MDEMFEIIKAGAPNGPPEQALYRIQQTYSDGSGGRLNVDWDGLLRLHEVIHDRIALEGY
Ga0334884_1051551Ga0334884_10515512F070092MAINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVSELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334884_1053645Ga0334884_10536454F093892QILSGSIMIFLFKYKANQPAEPVKIKTSPFRNLDETCSLVEEVFKREKSKEKKTYFCRTRGRIDGSI
Ga0334884_1059559Ga0334884_10595591F075034GRVDRTMIYCHSCGCETTADRICPACAEALGERCRVHRVRYVEDLPVSVLEEMQVERGRR
Ga0334884_1064643Ga0334884_10646433F066219MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKPDWEPSFVIELE
Ga0334884_1066730Ga0334884_10667303F005744MDEMFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWEGLLRLHEVIHDRIALEGRVCETCGTKGCHRPATWEIECRGAGVASCLIYSCDDHCPDPAILSPQDEIRRLVEE
Ga0334884_1082368Ga0334884_10823682F001849MHILYTPMLASGIWIGGGSVGLLLVIVIVVLLVRR
Ga0334884_1088953Ga0334884_10889532F079824MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRKVISNYKTVFSEYIPIEEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSPCSVDRCEKVHIIYLYMHDPYQYEPITHIRADVVGQLYDSNEIVAVPPKRVRKRKKKEDE
Ga0334884_1093443Ga0334884_10934432F004383MACDCESPCRECKGNGSECGMDPAECGHAVLPSSDNLLERAFMARVRADEYAQELNRLQKEFDARPDVLDLKRRIERCEEVRRQCIEQAKAAGISKQGNYLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKETGVSVEYVRPEVGE
Ga0334884_1093443Ga0334884_10934433F003987MIPALPCGTFSDGDTLAGAFYVAAFEDGDRTHHVGEYRIETLVRALRALQACGNDDVEIGSIERGGRQHLLLIGLDGEARFGDRQIGCIVVCPVVVDSRGRYGSSSTATTPRRYSAAATDTSRTC
Ga0334884_1109359Ga0334884_11093592F071725MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKLEKKEINEVGLFQELEKLSKVESLPE
Ga0334884_1109807Ga0334884_11098072F093482VEERTLDELWERIEKEDPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWFIQSRLRKHGGKCLHEH
Ga0334884_1130313Ga0334884_11303131F059692DKETEQLILKKLQLDYLSLHAILTDVEKIISALVVDLDPRVNEIQRIQDQIRVYLREP
Ga0334884_1130313Ga0334884_11303133F099347MNLADFIENFEAFITYIEEAWEQKDLEILKAIVSDCEDFIHSHGHQFKCYSQTVKEWKETYRKNREERKEIVKGICEWCGRKKGTNCHHLAKRGRLVLYNDVRLLRILCADCHRLFHS
Ga0334884_1138180Ga0334884_11381801F070092MAINDRLKPVMELLETNRQKIDLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIKDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVSELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGF
Ga0334884_1158002Ga0334884_11580022F077264ADWFGPPGPERFVHMALKLIWNLRADSAWIELVKVQAIETGRSSPGAFVRDLVWTLSKNPTIKNRIFEAMQGVQYGQR
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