NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033162

3300033162: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R3



Overview

Basic Information
IMG/M Taxon OID3300033162 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356217 | Ga0334901
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size318546313
Sequencing Scaffolds13
Novel Protein Genes17
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0091
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium1
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin1931

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F031354Metagenome / Metatranscriptome182Y
F055749Metagenome / Metatranscriptome138N
F065263Metagenome128Y
F066219Metagenome / Metatranscriptome127Y
F070092Metagenome123N
F071725Metagenome122N
F076577Metagenome118N
F083694Metagenome112Y
F093482Metagenome106N
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334901_1002384All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes16247Open in IMG/M
Ga0334901_1013325All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0093519Open in IMG/M
Ga0334901_1013852All Organisms → cellular organisms → Bacteria3397Open in IMG/M
Ga0334901_1017014All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium2810Open in IMG/M
Ga0334901_1022873Not Available2108Open in IMG/M
Ga0334901_1022959Not Available2101Open in IMG/M
Ga0334901_1026261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1842Open in IMG/M
Ga0334901_1027717All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga1744Open in IMG/M
Ga0334901_1031031All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC1551Open in IMG/M
Ga0334901_1036871All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga1298Open in IMG/M
Ga0334901_1043148All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin1931106Open in IMG/M
Ga0334901_1045426Not Available1051Open in IMG/M
Ga0334901_1051194All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes934Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334901_1002384Ga0334901_10023849F065263MEAALYAKLIISSLVMIIAGWLFQDQADRFVGRFAKFIQDSLTVILIIAGLVCTVSVIAVIWINN
Ga0334901_1013325Ga0334901_10133251F055749MNLIMIIAVGILTLVAIITVGPVVGGSIELAMPEVAEDSPWNPTTNDNLPEGAATWTQLIPLVVLAVLALIIGLVIMYFRNAAR
Ga0334901_1013852Ga0334901_10138524F022008MTVSEIETLREALMDLSKQVQALSEDNRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD
Ga0334901_1017014Ga0334901_10170141F076577MEIAFHFGAISYAPSNGKKRREMWKEFKENAIDKRLKYVNPDRRCGHPVNLDTLDYCWGYAHKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
Ga0334901_1017014Ga0334901_10170142F071725MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKLEKKEINEVGLFQELEKLSKVESLPG
Ga0334901_1017014Ga0334901_10170144F093482MEERTLDSLWEKIEKENPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
Ga0334901_1022873Ga0334901_10228733F031354MKTTFDISDILYPIINVTSVTSTIDGRVYRDKKPLNSELQDIIVIPLSNFNGDEIIQDATFMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFDITNQTVMQDTDQISMSYVNLRINCYIEK
Ga0334901_1022959Ga0334901_10229592F066219MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSKVFDWNSKRLLTISPIGE
Ga0334901_1026261Ga0334901_10262613F103496MPFADGVRKLPLTKLIALCFTMFVCILIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHNLNVRKGEKS
Ga0334901_1026261Ga0334901_10262614F022008MCIPCIERGMAMTVTEIEMLREALMDLSKQVQALSEDSRTSFGRIYDRLTTIETQMSERECQFRKFEKALENHETRIRSVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLIVQILGD
Ga0334901_1027717Ga0334901_10277171F070092MAINDRLKPVMELLETNRQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFTDMLKFLDGTNNAVYISETLKYKGG
Ga0334901_1031031Ga0334901_10310313F083694METDVVTKLKNRQLARLLTHLERTGQLTVELEKTLKRSFRYTFEDVEALVQRLGLDKENKDGNLKD
Ga0334901_1036871Ga0334901_10368711F070092MAINDRLKPVMELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334901_1043148Ga0334901_10431482F103496MSINDSVRQMPLTKLIALCFTVFVCVLIVLDVTTLCPLTERSADLVKWLGSTIIVSYFGKSAYEHNVNVKKGEKS
Ga0334901_1043148Ga0334901_10431483F022008MTVNEIEVLQEALTELSKQVKSLSDDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0334901_1045426Ga0334901_10454261F070092MAINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334901_1051194Ga0334901_10511941F065263MEAEFYGKLIISSLAVIIAGWLFQDQADRFVGRFAKFIQDSLTVILIIAGLVCTVSVIAVIWIN
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