| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031444 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267078 | Ga0228557 |
| Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_3 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 27796903 |
| Sequencing Scaffolds | 14 |
| Novel Protein Genes | 15 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 2 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 6 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 3 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007736 | Metagenome / Metatranscriptome | 345 | Y |
| F024700 | Metagenome / Metatranscriptome | 204 | Y |
| F024710 | Metagenome / Metatranscriptome | 204 | Y |
| F026197 | Metagenome / Metatranscriptome | 198 | Y |
| F039928 | Metagenome / Metatranscriptome | 162 | N |
| F039952 | Metagenome / Metatranscriptome | 162 | N |
| F039966 | Metagenome / Metatranscriptome | 162 | N |
| F044865 | Metagenome / Metatranscriptome | 153 | Y |
| F048727 | Metagenome / Metatranscriptome | 147 | Y |
| F061461 | Metagenome / Metatranscriptome | 131 | Y |
| F069666 | Metagenome / Metatranscriptome | 123 | Y |
| F074330 | Metagenome / Metatranscriptome | 119 | N |
| F079542 | Metagenome / Metatranscriptome | 115 | N |
| F090311 | Metagenome / Metatranscriptome | 108 | N |
| F104622 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0228557_103916 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1354 | Open in IMG/M |
| Ga0228557_104644 | All Organisms → cellular organisms → Eukaryota | 1247 | Open in IMG/M |
| Ga0228557_106732 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1036 | Open in IMG/M |
| Ga0228557_108414 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 921 | Open in IMG/M |
| Ga0228557_108943 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 889 | Open in IMG/M |
| Ga0228557_109506 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 858 | Open in IMG/M |
| Ga0228557_111278 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 777 | Open in IMG/M |
| Ga0228557_111327 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 775 | Open in IMG/M |
| Ga0228557_111766 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 757 | Open in IMG/M |
| Ga0228557_112458 | Not Available | 728 | Open in IMG/M |
| Ga0228557_115333 | All Organisms → cellular organisms → Eukaryota | 628 | Open in IMG/M |
| Ga0228557_115385 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 627 | Open in IMG/M |
| Ga0228557_115786 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 615 | Open in IMG/M |
| Ga0228557_115849 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 613 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0228557_102301 | Ga0228557_1023011 | F024710 | SFQARAVGPSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQIRDPGRDGKSKMLCTVKSNEFACDDPVYNSTQIIGRPVKGKQNTYTVESYRNTWTKSPPEIVAAGLCDTSTYKACFTVPDLSKVDATRKMAGHVGSWH |
| Ga0228557_103916 | Ga0228557_1039161 | F044865 | FSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD |
| Ga0228557_104644 | Ga0228557_1046441 | F026197 | DKELDKGPTGLMMMLPVYLTLLCGAVAMPFPSWINETTLCANGQCNKPNSMYERIADIQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTHNCGGHDSEILSCNIDEAWKNLKIEYDAFDFNKEPVPQTAAYAKWLKAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA |
| Ga0228557_106732 | Ga0228557_1067321 | F079542 | MTPKSGGKSARKSGNQSSRSTMLTNRTSSPTGRYHPDPERRLELRKADLHANIDYLAPNGAPDNDRKAKESSWLVSQAFIEGLRYYPTGKAVLESNDSEATYSGNTHGKKAYNMEHMETDLRARLEIAPRFDNQEWRDDQLPREWVPDKSPSMKKHMARVRERLKR |
| Ga0228557_108414 | Ga0228557_1084141 | F039928 | VSPTFRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF |
| Ga0228557_108943 | Ga0228557_1089431 | F090311 | ASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSMVVAVASLTNSEQLWGLRVWNAHAALVRKQRERVEETARRAIKSMSLQSLRAAMNTWVAFSHAQKRSHQRLLSAASSFRGDGMRKAWNGWLGLLHDREVMVSAVTSMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPSKRSVRKAINSWIEYVYTIRALSRGAAAMRLHEERVAFSTWHEHVWSEGERDAAMRRAVASMLQSSVRASLNTWMSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSM |
| Ga0228557_109506 | Ga0228557_1095061 | F007736 | VGTEFKCRLSVPQAKAAFVNAQKETGGAVDDTTLDFDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG |
| Ga0228557_111278 | Ga0228557_1112781 | F074330 | AGPSRNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLRTNAPRLELAAPCQRRPAPC |
| Ga0228557_111327 | Ga0228557_1113271 | F048727 | LVPVASGHMSFAMAVRFNTTVSAADARLANMSYAQKISEQRLQRSQERSKWYQLSEEERSEILFPAPKKIQTEYYDATPEQTRQVESHFRGEGLHWRPTAESQQVSVKEVIKNDVDNPCNKAPFQPRRPWHAGGGGYDSRLG |
| Ga0228557_111766 | Ga0228557_1117661 | F069666 | DVEQLIAAGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR |
| Ga0228557_112458 | Ga0228557_1124581 | F039952 | LARKAEVADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGNPFT |
| Ga0228557_115333 | Ga0228557_1153332 | F024700 | AGRRVALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTQLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW |
| Ga0228557_115385 | Ga0228557_1153851 | F061461 | GAPFQSVVCSTMPKGIPAPGPWDLPGDVSTLSNEGLAEGESIWVRLATIVRARRLDLRLLMNACDLHNRGMVPIKEFQKGLAYSLGNQWNELECTTAEFKELTDPYLSRVPKKPGDPDPFVKWQEFTTHVQALADQMGSGKAGDY |
| Ga0228557_115786 | Ga0228557_1157861 | F039966 | MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPMIAAAELAVLREMCEADSMPARLEQCLISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGATDDFGSAEERVAALAEPAFSPEGQLSVATTGSAAGPPALLPQPSLSGMAVTYDAREVAL |
| Ga0228557_115849 | Ga0228557_1158491 | F104622 | LKTFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |