Sample 3300031157

Basic Information
IMG/M Taxon OID	3300031157 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267093 \| Ga0228572
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_4mM_3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_4mM_3 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	19152982
Sequencing Scaffolds	15
Novel Protein Genes	18
Associated Families	18

Dataset Contents

Total Genome Size

19152982

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	6
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005228	Metagenome / Metatranscriptome	407	Y
F006495	Metagenome / Metatranscriptome	371	Y
F007958	Metagenome / Metatranscriptome	341	Y
F008291	Metagenome / Metatranscriptome	335	Y
F013853	Metagenome / Metatranscriptome	267	N
F024700	Metagenome / Metatranscriptome	204	Y
F028693	Metagenome / Metatranscriptome	190	Y
F032522	Metagenome / Metatranscriptome	179	Y
F039928	Metagenome / Metatranscriptome	162	N
F039966	Metagenome / Metatranscriptome	162	N
F047450	Metagenome / Metatranscriptome	149	Y
F063376	Metagenome / Metatranscriptome	129	Y
F080775	Metagenome / Metatranscriptome	114	N
F086389	Metagenome / Metatranscriptome	110	Y
F093418	Metagenome / Metatranscriptome	106	Y
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228572_100618	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2137	Open in IMG/M
Ga0228572_103651	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1056	Open in IMG/M
Ga0228572_103812	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1033	Open in IMG/M
Ga0228572_104017	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1009	Open in IMG/M
Ga0228572_104555	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	951	Open in IMG/M
Ga0228572_105102	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	899	Open in IMG/M
Ga0228572_107326	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	746	Open in IMG/M
Ga0228572_108073	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	705	Open in IMG/M
Ga0228572_108090	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	704	Open in IMG/M
Ga0228572_108389	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	689	Open in IMG/M
Ga0228572_109451	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	642	Open in IMG/M
Ga0228572_109920	All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	625	Open in IMG/M
Ga0228572_110864	All Organisms → cellular organisms → Eukaryota	592	Open in IMG/M
Ga0228572_110999	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	588	Open in IMG/M
Ga0228572_112659	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	540	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228572_100618	Ga0228572_1006181	F095000	RDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228572_101058	Ga0228572_1010581	F047450	AFLNSQSLEQMAAGDAGDNDAMATLDYGEFLECLSRCARDKYGEIKLMSLADGVRGVFQNILGEKTDEAVIRDATYIHAERYNWKLSKPLPGQSLAAHRKWCDCWQNIEIADLHYFPIWEKSVFGCLQECFSDLTNIFAHYSKSIGGSTTAEDAVEMTMTEFKDLVKDVGLETKDLKFDVMCNMFKKANALNSNAVMQQRKQEAGTSAAKMEGVGSASKAMAQTNKRSKSANKGREDEMDQELVLYEFVEVLIRIGFWRANPFHGINKLAAKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDKAMLSALATYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGADARAQGYTPGNGVGNWEIFQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSAAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSVTLPGQALKDHKKWLQVWQRLDIGDMYYFPLWEKGVHDVLQKHFKDLCLIFFAYCRSMLGSASAEDAAEMEMAEFKDFVDECGLETKQISFDLMSNNF
Ga0228572_103650	Ga0228572_1036501	F086389	TVRKEEAARLRAIQERIKTVMEQHSTFRKIIEENQALDKYVKAHPNLTKTQMRDLFDKRPDFVKCFDASPEELMRIGRAPALRLMLEQSKDLKAALDQKEDVRKILESKPDLTRIELNELVHTNAALKDLYDSRPELKELLQQRARLFEEERKALEDQKADAFIAGPCVKVSALYLKKEGVLVTIALPESMVRHMRFEFSSVRPGTTNVLAQHQGRSVVAFELRLEDLLNMQAAGQFVLEQGKLKLNVDKTLLFLNEKMRF
Ga0228572_103651	Ga0228572_1036511	F007958	ASLIAHPAAMGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIE
Ga0228572_103812	Ga0228572_1038121	F013853	MLSKVPRHIRVAGDPNRLAFTLNYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGVIAGFQWLPNLVLLVGLTNGYMVTVDFGALIKLQQSNKLPDRVSAMGTSRVFNEYLQDVSAFYTANVGQRVACCGDTMVKIVHRTGVELEVHLEVDLDRQAKIGHYLDKVDWDDSAKAFACSATDGFLYVHEILD
Ga0228572_104017	Ga0228572_1040171	F005228	LRKRKALACVSSAMADEGMAEAKKTIVASGYKQVGSRATPEAITKEIKKLPAASGMLDSRKRALHDLAHALAYVQENHKETVCNNCKTEQCVFHLIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPP
Ga0228572_104555	Ga0228572_1045551	F028693	QMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY
Ga0228572_105102	Ga0228572_1051021	F102393	VCSCFFEQPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228572_107326	Ga0228572_1073262	F104431	LCTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG
Ga0228572_108073	Ga0228572_1080731	F006495	VTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228572_108090	Ga0228572_1080901	F080775	RKLVLEAELKEIDEDIASNESMSRKYGAEFFTEGAARLAQSRAEKQQKLAEIKQQLAETSTSVRQGKQLLGALAENYGNMAPPTYINPEGGQLYTQQFVTTRGDSPARVLTTSPILADRR
Ga0228572_108389	Ga0228572_1083891	F008291	RTRSATRRAAEANGLRMANIPDLRSVQIASASIANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM
Ga0228572_109451	Ga0228572_1094511	F039966	ERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPAPMIAAAELAVLREMCEADSMPVRLEQCSISELFRLVEGASFLDAPRALNHAQCALGTRLNGKCANELRELLGATEGFGNADERVAALAEPAFSPEGQLSEATVGSAGGAPALLQPQPSLSGMAVTDDAKEVALGMVDVGTLVELKGVSQSWLALARRVLCSRLSRCEGQPAP
Ga0228572_109920	Ga0228572_1099201	F024700	MIAPARRRVAACRQLPWSHANHIRSALLALAPTVDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228572_110721	Ga0228572_1107211	F093418	KHFAELTLIFLAYCRSLLGSDTAEDAMEMEMSEFHDFVVECGLETKHVSFDLMTNMFIKANATNSAAVRDQHSEGRRSAETKMDHLVGKGDTLATGRTTKVVGKVKGTNDGKEAKKDAELVLYEFMNLLVRIAFQRANPTFGNFGDQKPVKHLPGCLRTMLEDEILPRARKDTSAIFREKIMSEMSVLKVLDDYRPKL
Ga0228572_110864	Ga0228572_1108641	F032522	DKGPTGLMMMLPVYLTLLCGAVAMPFPSWINETTLCANGQCNKPNSMYERIADIQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTHNCGGHDSEILSCNIDEAWKNLKIEYDAFDFNKEPVPQTAAYAKWLKAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVV
Ga0228572_110999	Ga0228572_1109991	F063376	YDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228572_112659	Ga0228572_1126591	F039928	FRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCDDIRQGGFELVAWKDFVEDVMKQG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031157: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_4mM_3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences