NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031133

3300031133: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLT.R1



Overview

Basic Information
IMG/M Taxon OID3300031133 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133512 | Gp0324019 | Ga0308163
Sample NamePhyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLT.R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size930118898
Sequencing Scaffolds0
Novel Protein Genes11
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081964Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0308163_10000639Ga0308163_1000063927F081964VSQPVVSYRHAIIRAVTGNRPAMVFHVVDETALRSICERLAESERAFEILRAKGYGKSGQLLHEVAALVLNAS
Ga0308163_10003191Ga0308163_100031914F081964MTMPIACYRDQVIRAVTGNQPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGRTGLLLDELAALVPAKT
Ga0308163_10010406Ga0308163_100104064F081964MSMPVEVYRDQIIRAVTGNQPAMVFHVVDEAALRRLSDRLAESERAHALLRAKGYGGTGLLLDELAALVPSKDFV
Ga0308163_10023108Ga0308163_100231084F081964VSQPVVSYRHVIIRAVTGGCPAMVFHVVDETALRNICERLAESERAFEILHAKGYGRPGLLLQEVAALVPNAC
Ga0308163_10029748Ga0308163_100297486F081964GKPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPVKT
Ga0308163_10040288Ga0308163_100402884F081964VSMPIVCYRDQIIRAVTGNQPAMVFHVTDETALRRLSERLAESERAHALIRAKGYGSTGMLLDELAATIPNKDPTWTKC
Ga0308163_10067821Ga0308163_100678213F081964MRRAAFSFQGVPVSQPVVSYRHAIIRAVTGGRPAMVFHVVDETALRNICERLAESERAFEILRAKGYGKSGQLLHEVAALVPNAS
Ga0308163_10072120Ga0308163_100721201F081964VRCFRYAIIRAVTGNCPAIVWKVIDDAALNRICERLAEAERAFEILRAKGHGKPGLLLHEVAALVPDACG
Ga0308163_10087355Ga0308163_100873553F081964VSQPIDCYRHAIIRAVTGNRPAIVWNVTDGAALDRICERLAEAERAFEILRAKGHGRPGLLLHEVAALVPDIK
Ga0308163_10143738Ga0308163_101437383F081964VSQPVDCYRHAIIRAVTGNRPAIVWNVTDRAALDRICERLAESERAAEILQAKGYGRPGLLLHEVAALVPSSPSRDPKGV
Ga0308163_10409365Ga0308163_104093651F081964VSQPVDCYRHAIIRAVTGNRPAMVFHVVDETALRHICERLAEAERAFEILRAKGHGKSGLLLHEVAALVPNAS
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