NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030656

3300030656: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 13_T1E_3DEL1 developmental time series (Eukaryote Community Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030656 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128996 | Gp0213230 | Ga0187738
Sample NameMetatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 13_T1E_3DEL1 developmental time series (Eukaryote Community Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56844111
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Pennsylvania
CoordinatesLat. (o)40.7982Long. (o)-77.8599Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000241Metagenome / Metatranscriptome1481Y
F003025Metagenome / Metatranscriptome512Y
F003866Metagenome / Metatranscriptome464Y
F004604Metagenome / Metatranscriptome431Y
F017489Metagenome / Metatranscriptome240Y
F044518Metatranscriptome154Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187738_120499All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae586Open in IMG/M
Ga0187738_149447All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae502Open in IMG/M
Ga0187738_158838All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae546Open in IMG/M
Ga0187738_159892All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae541Open in IMG/M
Ga0187738_169495All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187738_120499Ga0187738_1204991F017489LALWTCVWMLGTYPLGRPLSEGWRFMFTVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187738_149447Ga0187738_1494471F004604VYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187738_158838Ga0187738_1588382F003025AFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK
Ga0187738_159892Ga0187738_1598921F003866ADAFAKQHFSAMGDDGDVRLTTVSKDGEKLGNLIPAGSMSSAEGKGAIPGKWKIPGVQEPVELKVSGSSVKSVQQPFGNQPFLGEIEEGEKMLGLHVTLGGFPMKAWMKKEGQQTVLTFSNGGRWSKL
Ga0187738_160556Ga0187738_1605561F000241PAVAVLAGVYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALDKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187738_169495Ga0187738_1694951F044518GNEGHDIPVLVCEKTSSELGQKSIENWRSKLNDEKGFAPQEHYERLFRGEELYTSLGNGHFNQALNLFFRECPSIYSQEKYTIGQDRDLKEAVYQGVGAIVLKAEIPLRDRETISKLLNSKREFKWNVHPDGTLDITDAFEDTRTCKQFEALSKVLDAVELNCLVRSE
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