NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030505

3300030505: Agave microbial communities from Guanajuato, Mexico - Mg.Ma.e (v2)



Overview

Basic Information
IMG/M Taxon OID3300030505 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053055 | Gp0104155 | Ga0268245
Sample NameAgave microbial communities from Guanajuato, Mexico - Mg.Ma.e (v2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size653701676
Sequencing Scaffolds8
Novel Protein Genes59
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae1
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAgave Microbial Communities From California, Usa, And Mexico
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant surface

Location Information
LocationGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009290Metagenome / Metatranscriptome320Y
F013050Metagenome / Metatranscriptome275Y
F014785Metagenome / Metatranscriptome260Y
F021175Metagenome220Y
F034980Metagenome / Metatranscriptome173Y
F046267Metagenome / Metatranscriptome151Y
F066116Metagenome / Metatranscriptome127Y
F088163Metagenome109Y
F102408Metagenome101Y
F102441Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0268245_10006489All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina2164Open in IMG/M
Ga0268245_10122839All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae747Open in IMG/M
Ga0268245_10163420Not Available667Open in IMG/M
Ga0268245_10219772Not Available591Open in IMG/M
Ga0268245_10227024Not Available583Open in IMG/M
Ga0268245_10249334Not Available561Open in IMG/M
Ga0268245_10317468All Organisms → cellular organisms → Bacteria507Open in IMG/M
Ga0268245_10322922All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0268245_10006489Ga0268245_100064892F013050MSKGKQPRTRVKVPKLLLSENKEGFFEYNQEIGLEAAIF
Ga0268245_10030064Ga0268245_100300642F102441MALESPIVFGGITSQGCPIGRRGVLGVMLGFDPIYMKFGMEVEIDELNDFPKIRYNQLISYPVRSRTIKFS
Ga0268245_10046425Ga0268245_100464252F102441MKLIFGQPVDKMAVETPIVFKGIRSHGCSVGRRGILEVMLDFYPIYMKFSMDEEFDELNDFPKFGCNQLITRPVRARTKKFS
Ga0268245_10046425Ga0268245_100464253F102441KLIFGQPVDKMAVESAIVFGGIKLHGCSVGGRGILGVMLHCYPIYMKFSMDVEFDELNDFPKFGCDQLITRLVRARTKKFS
Ga0268245_10056291Ga0268245_100562911F102441MKLIFGQPVDKIAVESPIVFGGITSHECLVGRRGVLVVMSDFDLIFMKFGMEVDFDELNNFPKFGDGQLI
Ga0268245_10059137Ga0268245_100591373F102441MRLIVGQSVDKIAFESPIVFGGIKSHRCPVRWRGVLGVMSDFDPIDMKFGMEVEFDAFKDYPKFGCDKLISCPVRARIKKFS
Ga0268245_10059137Ga0268245_100591374F102441MRLIVGQSVDKIAFECPIVFGGIKSHRCPVGGRGVLGVMSDFDSIDMKFGMEVEFDALKDYPKFGCDQLICCPVRARRKKFS
Ga0268245_10069344Ga0268245_100693442F102441MQLNFGQPIDKMAIESPIVFGSIKWRGCPVGGQGVLGVMLDFDPIYMKFSMEVDFDELNDLPKFGYNQLISCPVRARTKKFS
Ga0268245_10069606Ga0268245_100696061F102441MRLIFDQPVDKIVVNDPIIFGGIKSHKCPIGGRGVLGLMLDFDPIYMKLGMEVDFDVLNDFPKFGCNKLIS
Ga0268245_10075521Ga0268245_100755211F102441KFILGQPVDKMAVESPIVFGSIKSHGFPVRGRGVLGVMLDFDSIHMKFSMEVDSDEFNDFSKFGYNQLISCPVRARTKKFS
Ga0268245_10075612Ga0268245_100756122F102441MKLIFGQPVDKMAVESPIVFGSLNSHGCPVGGRGILGVMLDFDPIYMKFSMVVEFDELNDFPKFGYNQLISCAVTARTKKFS
Ga0268245_10075612Ga0268245_100756123F102441MKLIFGQPVDKIVVKSPIVFGSIKSHRCPVGGRGVFGVMLDFDLIYMKFNMCVEFYELNDFPKFGYNQLISCAVRARTKKFS
Ga0268245_10080530Ga0268245_100805303F102441MRLIFGQPVDKIEVESPIVFGGIQSHGCLVGGRGVLGVMSDFGPIEMKFGMGVEFDELNDFPKFGCDELISCPVRARTKKFS
Ga0268245_10082966Ga0268245_100829662F102441MRLIFGQSVDKIAVEIPIVLGDIKLQRCHIGGRGVLGVMPDFDPIDMESGMEIEFDELNHYPKFGSDQLISCPVRAPAKKFS
Ga0268245_10086328Ga0268245_100863282F102441MRLILGQLVDKIAVESPIVFGGIKLNRCLIGERGVLGVMSDFGPIVMKFGMEVEIDELNDYPKFGHHQLISCPVRGRTKNSANAFPLSDR
Ga0268245_10087898Ga0268245_100878982F102441MKLIFDQSVDKIVVESPIVFGGIKSHGCSVGGRGVLGVMLDFTPMYIKFSMEVDLDELNDFPKFGYNQLSSCAVRARIKKFS
Ga0268245_10096185Ga0268245_100961851F102441LIFGQPVDKMVVESPIVFGGIKSHGCSVEGRGVLGVMLDFYPIYMKFGMEVEFDEINDFLKFGCNQLITHPVRARTKKFR
Ga0268245_10096185Ga0268245_100961852F102441MKLIFGQPVDKMVVESPIVFGGIKSHGYSVGGRGVLGVMLDFYPIYMKSSIEVEIDVLNDYPKFGCDQLISCLVGGHTKKFSKYFSLVRSIKVDVIVK
Ga0268245_10115145Ga0268245_101151453F102441MKLIFGQLVDKMAVESPIVFGGIKSHGCAVGGRDVLGVMFGFDPIYMKFGMAVEFDELNDFPKFGCDQLITRPVRARTKKFS
Ga0268245_10122839Ga0268245_101228391F014785VATLYCPCGQAHELWAEFWWTEGRYQWVFFDSEQRSETYAEQVENCPACGRRLERKNLLSGLSHARAAD
Ga0268245_10127082Ga0268245_101270822F102441MKLIFGQPVDKMAVESPIVFGSIKSHECPVEGRGILGVMLDFDRIYMKFSMEVDFDELNDFPKFGYNQLIRCPVRACTKKFS
Ga0268245_10127082Ga0268245_101270823F102441MKLIFGQSVDKMAVESPIVFGGIKLHRCLVGGRGVLGVMSDFCPIDMKFGMDVEFDALKDYPKFGCDQLIRCLVRARTKKFS
Ga0268245_10129429Ga0268245_101294292F102441MRLIFGQSVDKLGLESPIVFNGIKLHRCPVGGQGLLRVMSDFSRIDMKFGMYVEFDALNDYLKMGCDELISYHIEARTKNQSTLFTCE
Ga0268245_10141730Ga0268245_101417302F102441MKLIFGQPVDKMAVKSPIVFGGIKLHWCSVGGRGVLGVMLDFYLIYMKFSTDVEFDELNDFPKFGCDQIITRPVSARTKKFS
Ga0268245_10141730Ga0268245_101417303F102441MKLIFDQLVDKMAVESPIVFGGIKSHGCAVGGRGVLGVMFGFDPIYMKFGMEVEFDELNDFPKFGCDQLITCPVRARTKKIQLTFSLVCAITVDVIAT
Ga0268245_10142179Ga0268245_101421792F102441LIFGQPIEKIAFKSPIVFGGIKLHECSIGGRGVLGVMLDFDLIYTKFGMEVEYDVLKDFPKFGCNQLITCLVGARTKKFS
Ga0268245_10160337Ga0268245_101603371F102441MKLIFGQSVDKMAVESPIVFGGIKLHRCPVGGRGVLGVMSDFGPIDMKFGMEVEFDALKDYPKFGCDQLIRCPVRARTKKIS
Ga0268245_10160337Ga0268245_101603372F102441MAVENPIVFGGIESHRCPIGGRGVLGVMLDFGPIDMKFGMEVEFDALKDYPKFGCDQLIRCPVRARTKNSANPLPFRAR
Ga0268245_10162319Ga0268245_101623191F102441MKLIFGQPVDKIGIKSPIVFSGIKSHECPVGGRGILGIMFDFNLIYMKFGMGVAFDRFNNVPKFGCDQLINFPIRAPTKKFS
Ga0268245_10163420Ga0268245_101634201F009290VATTANIDKTARTAREMAEAQRDSFEAIAENFAAAQHRSIGIAEGGLEFMRLQEENARAAQEFFANGVRLLQLQQRNAEFVQGWMGNAVEVVREQSEENARTAEAFARSVSKQQESIRALGRGWFGAYGEFFSPFAYFQEGMKT
Ga0268245_10165747Ga0268245_101657471F102441MRLIFGQPVDKIEVESPIVFGGIQSHGCHVGGRGVLGVMSDFGPIDMKFGMGVECDELNDYPKFGCDELISCPVRARIKKFS
Ga0268245_10166597Ga0268245_101665971F102441MNFSQPVDKIVVESPIVFGGIRSHKYPVGGSGVLGVMLDFDPIYLKFGMAKEFDILNDFQKFGRIQLISCLVGARTKKFS
Ga0268245_10169889Ga0268245_101698892F102441MKLIFGQPVDKMAVESPIVFGGIKSRGYSVGGRGVLGVMLDFYLIYMKFSMEVEFDELNDFPKFGCGRLIH
Ga0268245_10173861Ga0268245_101738611F102441MNLIFGQPVDKIAVESSIVFGGIKSHGCSVGRRGVLGVMLDFNPIYMKFSMEVDFDELNDFPKFGYNQLSSCA
Ga0268245_10173861Ga0268245_101738612F102441MKLIFGQPVDKIAVESPIVFGSIKPHGCLVGGRGVLRVTLDFDPIFMKCSMDVDVDKLNDFPMFGYNQLISCPVRAHTKKFS
Ga0268245_10185045Ga0268245_101850451F102441LTRLPCPRDNGXCNCPMRLIFGQSVDKIEVESPIVFGGTKLHRCLVGGXGVLRVMSDFDPIDMKFGMVVEFDELNYYPKFGSHQLISCPVRATAKKFS
Ga0268245_10219772Ga0268245_102197721F066116MLLLGLLAAMMLMASPVLAWQPGPGEGSKYSKNYYPNSYFKYCEPDGSQYYGDKKASNTKWCDHWYTEYQKKTFEGKKWYWVHVYYSWKTPDGKKHEWDDWYYCQYHKYDDPDSTHPGFKAWVTYKPTGNHYWEWFYWQR
Ga0268245_10221639Ga0268245_102216391F102441MKLIFSQPVDKIAVESPIVFGGIKSHGCSVGERGVLGVMLDFNTIYMKFSMEVDFDELNDFPKFGYNQLSSCAVRAHTKKFS
Ga0268245_10227024Ga0268245_102270241F088163MYDCFVYCWFVHVNIEPRLVVGWFEVELLSCSRFLWSVLCEEGDRVVNCCNRVNYEAMCGLMSCDAKCMNVLCVNPF
Ga0268245_10235162Ga0268245_102351622F102441MTLIFGQPVDKIAVESPIVFSSIKLYECPIGGRGVLGVMSDFGPIDMKFDIKVEFDELSDNPKFGCDQLISCPVGARTKKFS
Ga0268245_10239688Ga0268245_102396881F102441MKLIFSQPVDKMAVESPIVFGSIKSHGYPIGGXGILGVMLDFDPIYMKFNMEVDFYELNDFPKFGYNQLISCSVRVRTKKFS
Ga0268245_10247698Ga0268245_102476982F102441MRLIFVQSVDKIAVKSPIVFGGIKLHGCPVGGRGIFGVMSDFGSIDMKFSMGVEFDALNDYPKFGSDQLISCLVGASAKKFS
Ga0268245_10249334Ga0268245_102493341F021175MATEADLIREIRYLTGLMRQNCHDASWRMERLLSKAEKGESLDTRSTPAQLQEAREELQLLMRGIEGIEKLCEM
Ga0268245_10271354Ga0268245_102713541F102441MKLIFGQSVDKMGVKSPIVFGSIKSHGCPVGGRGVLRVMLDFDLIYMKFGMCVEFDELNNFPKFDYNQFISCPVRARTKNSANPLPFLAQ
Ga0268245_10280537Ga0268245_102805372F102441MRLIFGQSVDKLAVESHIVFGRIKSHRCPVGGRGIFGVMSDFGSIDMKFCMDIEFDALNDYPKFGSDQLISCRVGAPAKKFS
Ga0268245_10292381Ga0268245_102923812F102441MKFILGQPVDKMAVESPIVFGSIKSHGFPVRGRGVLGVMLDFDPIHMKFSMEVEFDELNDFPKFGYNQLIRCPVRARTKKFS
Ga0268245_10300466Ga0268245_103004662F102441VESPIIFGGIKSHGCPVGGQGVLGVMLDFNPIYMKFSMEVDFDELNDFPKFGYNQLSSYAVRARTKKFS
Ga0268245_10301349Ga0268245_103013491F102441AVESPIVFGGIKLNGCLIAGRGVLGVMSDFGPIVMKFGMEVEIDELNDYPKFGRHQLISCPVGGRTKNSANAFPLSDR
Ga0268245_10306373Ga0268245_103063732F102441MKLIFGQPVDKIAVESPIVFGSIKPHGCPVGGRGVLRVMLDFDPIFMKFSIEVDFDELNDLPKFGYNQLISCPVRARTKKFS
Ga0268245_10311667Ga0268245_103116672F034980VKQISKLDKTSLAIDRQKVARARQILGTRTMASTVDAALDEVINLARRRRVMERIRRSKSDGVGPSPAELRRLREP
Ga0268245_10313274Ga0268245_103132742F102441MKLIFGQSVDKIGVETPIVFGGIKSHRCSVEERGVLGVMLDFYPIYMKFGMEVEFVELNDFPKFGSDQLITHPVIAGTKKFS
Ga0268245_10315293Ga0268245_103152931F102441MTLISGQPVDKIAVESPIVFGGIKLHECHVGGRGVLGVMSDFGLIDMKFGIEVEFDELNDNPKFGCDQLISCPVGARIKKFS
Ga0268245_10315414Ga0268245_103154142F102441MRLIFGQPVDKIAVQSPIVFGGIKLHECPIGGXDVLGVMTDFGTIDMKFGMEVEFDILNDNPKFDCDQLISCLVGARTKNSANAFLVSDR
Ga0268245_10317468Ga0268245_103174682F046267MPRPRINLKDPSRFKDPANLSWERYVALQARERERYLTERAALPDDALSY
Ga0268245_10318006Ga0268245_103180061F102441VESPNVFGGIKLNGCLIGGRGVLGVMSDFGLIVMKFSMEVEIDELNDYPKFGCHQLISCPVRGRTKTFR
Ga0268245_10322922Ga0268245_103229221F102408MAIFHFPQFEHEPFWQYLSRFNDYRAQYVHFTYEKWEVCDAVLEGVTHETRAILESMCY
Ga0268245_10323261Ga0268245_103232611F102441LVFGQPVDKIEFEIPIVFGGIQSQGCLLGGRGVLGVMSDFGPIEMKFGMGVEFDELNDFPKFGCDELISCPVRARTKKFS
Ga0268245_10326215Ga0268245_103262152F102441MRLIFGQPVDKIEVESPIVFGGIQSHGCLVGRRGVLGVMSDFGPTDMKFGMGVEFDELNDYPKFGCDELISCPVRARTKKFN
Ga0268245_10327298Ga0268245_103272982F102441MKLIFGQPVDKMAVESPIVFGGKKSHGCPVGGPGVLGVMLGFDPIYMKFGMELEYDELNNFPKLGYNQLNSCPVRARTKNSANPLPFLAR
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