| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029900 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133355 | Gp0289633 | Ga0247048 |
| Sample Name | Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2b |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DMAC, Technical University of Denmark |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 216656245 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → cryoconite hole → cryoconite deposit |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Greenland: Tasiilaq | |||||||
| Coordinates | Lat. (o) | 65.41 | Long. (o) | -38.51 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009478 | Metagenome / Metatranscriptome | 317 | Y |
| F032009 | Metagenome / Metatranscriptome | 181 | Y |
| F045483 | Metagenome | 152 | N |
| F083559 | Metagenome | 112 | Y |
| F088794 | Metagenome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0247048_1008253 | Not Available | 3833 | Open in IMG/M |
| Ga0247048_1032410 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1300 | Open in IMG/M |
| Ga0247048_1048229 | Not Available | 926 | Open in IMG/M |
| Ga0247048_1086432 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 568 | Open in IMG/M |
| Ga0247048_1094614 | Not Available | 526 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0247048_1008253 | Ga0247048_10082531 | F083559 | VTVTALLDQPKLSLIDLPTLPHTVREFGIEARKLGKAWEAAFNGPIQTWSAAGTGERTYGVTVRLSRMKDTLTRELYSTNILFYLAEKDMAGMHNIYDMAKTLPFTRIRGPRTPVPHCPPRPGRLWYDANPEGVIMEDVRLAPATLPDGRAGFFATGQGYRGKVMLPDGLFVHDVGVYGGYLDPEARPSQLELTHLFGGIEFGAEKTGGQEDLFLTELGENIWVKGIIGSVTEELHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPASLRGYSLRGFIDGLPGAIGSEVWERVVRVGLGSNFIACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFDADDRPLFKSCVRAITPNDVPHCYNGLGELFDTKRVA |
| Ga0247048_1032410 | Ga0247048_10324102 | F009478 | VTPVAFPEADHEFYDRARQGLEAKGYTWLADVEDLTLSRIYPQNRTFMRLFVDAGRMIRANAYHLHPRGVVISLLQLVQLYPRHLRVIELCSEIGGQFVVTSNTHGVDRLEPPPEAKVERMPLQSKLLDVVTRHENRITEMLREHPERTPTSFETFEEVLASIARAHVVMARHRQKVGGLSRDELERLKGRPLTASEEAFLHEVQSREPG |
| Ga0247048_1048229 | Ga0247048_10482292 | F088794 | DRTGNINPDRQGCRMNAVLFVRATGGIDLPLVCSPSQVAPLLGRSDHAIRDDCMAGVIPTLPRAGGSGAHHRIATARLLDQIGIPYQIGIPYEIVASETIAP |
| Ga0247048_1086432 | Ga0247048_10864321 | F032009 | MKKKILIAFFFVVCTSYQCLSQTYVSLAPSVTNTAGTFAEKSNIAFELGKQWDVFSLGIDYGKTTLAPVTGRDTSNYLELRPNLNIFQEGKFTNTFTAGIGYIFNAKESLLTELTYGIEYSFSEKIHYNVFFGQYFYSGKTSASNVSFFGVSAAYYFSPNKGGSIF |
| Ga0247048_1094614 | Ga0247048_10946141 | F045483 | PMATMRRLFSALSVLGLSLLVLTGCVVPGGYDVNTLHVQPEAGLVYPGSTGVHTNDYNGSPGNYVSKGAVAATGKSGTTTHTQLEVLAYFSKTLAADGWKQTQEEVRAITPEGLPAHWIAWDKPKLHLSYLVEVWTVGEATKYYTQFGSNE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |