NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029887

3300029887: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35999



Overview

Basic Information
IMG/M Taxon OID3300029887 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283965 | Ga0245331
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35999
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size216274212
Sequencing Scaffolds11
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044554Metagenome154N
F044555Metagenome / Metatranscriptome154N
F050793Metagenome145N
F052660Metagenome142N
F055739Metagenome138N
F055775Metagenome138N
F064817Metagenome128N
F067720Metagenome125Y
F076190Metagenome118Y
F090515Metagenome108N
F094005Metagenome / Metatranscriptome106N
F101191Metagenome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245331_1000218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales100493Open in IMG/M
Ga0245331_1000273All Organisms → cellular organisms → Bacteria85403Open in IMG/M
Ga0245331_1000690All Organisms → cellular organisms → Bacteria39892Open in IMG/M
Ga0245331_1001341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia19475Open in IMG/M
Ga0245331_1002466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis10486Open in IMG/M
Ga0245331_1003517All Organisms → cellular organisms → Bacteria7392Open in IMG/M
Ga0245331_1006758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae4064Open in IMG/M
Ga0245331_1007159All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii3856Open in IMG/M
Ga0245331_1007867All Organisms → Viruses → Predicted Viral3568Open in IMG/M
Ga0245331_1011989All Organisms → cellular organisms → Bacteria2506Open in IMG/M
Ga0245331_1017895All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1787Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245331_1000218Ga0245331_100021814F055739MMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDKNGQMPPEGKTIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQRVITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYAAVVDYVRASFLGGCVVLHCEAPNGTALPDVWRIYRNDEQNPAGEAGWVRASGYAGVPVGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245331_1000273Ga0245331_100027375F050793MRETGAIAPNDAEREKTMRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEIFPTLADVREYAAQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0245331_1000690Ga0245331_100069015F101191LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYCWKEETHDAA
Ga0245331_1001341Ga0245331_100134129F067720MASTTYCHIGDVTDMFAAQDHFRDVTKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSCGAARCAART
Ga0245331_1002466Ga0245331_10024667F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAESILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245331_1003517Ga0245331_100351710F094005MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKIIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE
Ga0245331_1003517Ga0245331_100351711F032312MARIKDYDEDLSAPKLLKERARDNKGRFIKERARDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0245331_1006758Ga0245331_10067586F076190VRTADGSITISAKNVFTAASRVSGRVWSLVRITVPNDLKYVRIRVEKPQNNSLYPYFQREPL
Ga0245331_1007159Ga0245331_100715910F044555MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSHSQH
Ga0245331_1007159Ga0245331_10071593F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKIVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKIPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPECITGVFTDIWYKCQGYMDTDHASLEEILELMQHNWLKEFELLVFKRNYDTDMLFFNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETV
Ga0245331_1007159Ga0245331_10071595F105375MKNNETFQTTQHLDKLVTNLGLQIQGLFSLDLEEILDYSNNLMNLLVNVYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245331_1007867Ga0245331_10078672F055775MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINADSGTVTAIALN
Ga0245331_1011989Ga0245331_10119893F052660MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLYDGILMGIALPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNS
Ga0245331_1017895Ga0245331_10178952F090515VCQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS
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