NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029878

3300029878: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35366



Overview

Basic Information
IMG/M Taxon OID3300029878 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283961 | Ga0245327
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35366
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size177064436
Sequencing Scaffolds9
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides neonati1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F044555Metagenome / Metatranscriptome154N
F051936Metagenome143N
F055775Metagenome138N
F064817Metagenome128N
F080163Metagenome115N
F087336Metagenome110N
F088914Metagenome109N
F089054Metagenome109N
F090513Metagenome108N
F092228Metagenome107N
F101356Metagenome102N
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245327_100013All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii339142Open in IMG/M
Ga0245327_100251Not Available89229Open in IMG/M
Ga0245327_100626Not Available42417Open in IMG/M
Ga0245327_100852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis32810Open in IMG/M
Ga0245327_101326Not Available21457Open in IMG/M
Ga0245327_101508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae18575Open in IMG/M
Ga0245327_102127All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis13168Open in IMG/M
Ga0245327_103438All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7734Open in IMG/M
Ga0245327_107343All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides neonati3339Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245327_100013Ga0245327_100013128F092228MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAVADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSKLCCLDTTTNTRKILDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0245327_100251Ga0245327_100251101F105375MKNNEIFQTTQHLDKLITNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245327_100251Ga0245327_100251104F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDDFHNYSNTSNTHYEGGKFPSMLTIQLFNLEF
Ga0245327_100251Ga0245327_100251109F044555MKTITRITINQNGNQILTCKVCKDTNNILFMSNEEILELISGLDYMDNLPTVPDLEKPIEIQITSTREIPIEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245327_100251Ga0245327_1002512F080163MKTIKFLQESFETKERFQQEISFKYSYNQNTVESVDFRINRHNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESEVLDSEIELLQEKLDLIREEICKIMGINPDLQKKGHEENYIFNLNIDSDNQIGFLLQATEL
Ga0245327_100251Ga0245327_10025199F064817MNIKNLFNRFRKWEPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQKNQDENETI
Ga0245327_100626Ga0245327_1006266F055775MAQIAQQDNLVIEVTTTVAALDDDTKKKLIECIEGGTIADVILVTKEAEKKISHARVVRWLVDTTKDSPKYTIDIINADSGAVEAIALN
Ga0245327_100852Ga0245327_10085213F087336MHCLLRGMVAELEQVSKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0245327_101326Ga0245327_1013264F089054MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQEINKNHLHSKHIRLRLREILQINLSDITIIDIIPLP
Ga0245327_101508Ga0245327_10150813F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPRENRKNPGKFIVFSAWYAAKALEMDVK
Ga0245327_102127Ga0245327_10212714F090513MEWKLLHIKHILYMRPFGALKITPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0245327_103438Ga0245327_10343810F032286MVKWVCQIVTPIRHRALVFNTRLFAETAADDVLVTGGTFRFCRLVCLCVKRRNIMLNDKRRSLLNSALFRTDNRTGQKTFSPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNGLKTCA
Ga0245327_107343Ga0245327_1073431F051936KAFGFSVLQEHAVMTPVISISFLVLIIRYLSIHISIKK
Ga0245327_123113Ga0245327_1231132F101356MDVGELIPVVTPGKDGLSNSKFATTKIKSEGKRSILLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0245327_128985Ga0245327_1289852F101356MPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
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