NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029793

3300029793: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_31_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029793 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282899 | Ga0243738
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_31_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size271562172
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium5
Not Available2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:431

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F042936Metagenome157N
F058555Metagenome135N
F059106Metagenome134N
F067845Metagenome125N
F071325Metagenome122N
F075481Metagenome119N
F076189Metagenome118N
F078006Metagenome117N
F080673Metagenome115N
F083452Metagenome113N
F085718Metagenome111N
F089591Metagenome109N
F089592Metagenome109N
F092227Metagenome107N
F098313Metagenome104N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243738_1002718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae13177Open in IMG/M
Ga0243738_1003008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens11870Open in IMG/M
Ga0243738_1003570All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10013Open in IMG/M
Ga0243738_1005517All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium6534Open in IMG/M
Ga0243738_1005978All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium6021Open in IMG/M
Ga0243738_1006871All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium5219Open in IMG/M
Ga0243738_1007862Not Available4601Open in IMG/M
Ga0243738_1010512Not Available3510Open in IMG/M
Ga0243738_1019910All Organisms → cellular organisms → Bacteria1947Open in IMG/M
Ga0243738_1026055All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1525Open in IMG/M
Ga0243738_1029827All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1338Open in IMG/M
Ga0243738_1031241All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1281Open in IMG/M
Ga0243738_1035035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1148Open in IMG/M
Ga0243738_1035489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1134Open in IMG/M
Ga0243738_1053498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii769Open in IMG/M
Ga0243738_1079358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:43522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243738_1002718Ga0243738_100271812F071325KVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFSKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243738_1003008Ga0243738_10030081F099269VGELLLLDDLGDRAGGASVLASATGDAGILVSDGGDVLELQNASGAGVDANATSDALVGINY
Ga0243738_1003570Ga0243738_10035705F042936VWKPKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKVYFRSRLRGKG
Ga0243738_1005517Ga0243738_10055179F083452MSGRVKIKIKDKKPKIDVFKVIENQFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEKLGAKLSIDLIERYIKR
Ga0243738_1005978Ga0243738_100597812F075481MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTDKDVDPTTGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESKWPIAVTSISVLLILLGLIYLLKKMKVL
Ga0243738_1006871Ga0243738_10068712F058555MMGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVVAYLTIVNVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGTIMHIIIAEYFIKDVFLGVKGVEMGKAG
Ga0243738_1007862Ga0243738_10078622F098313MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRYDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
Ga0243738_1010512Ga0243738_10105122F089591MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFSLNENELNRYSMDKDNVASFK
Ga0243738_1010512Ga0243738_10105123F089592MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSXXXGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE
Ga0243738_1019910Ga0243738_10199101F026489LLTPKENQKSASDFDALEPRKRGCSPLLTPKQRAAPEKTEDSRLFGVKIF
Ga0243738_1026055Ga0243738_10260552F076189VLSAGHCFFISFPPFIKPLLYVEKLQIGTVLPVVSDLYREFAELLAYFDLHAIQSAQKPLHMLCNFHENTLGLLIFYTDYAII
Ga0243738_1029827Ga0243738_10298273F080673MDEIVKLQDEILSYLRNNITKDEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRDDRDKIDFMFIYYMARLCE
Ga0243738_1031241Ga0243738_10312411F078006MIRGQFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI
Ga0243738_1031241Ga0243738_10312413F085718MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRGIRGYIYLQGSSKSNVSYYVGRLEKDGCFDELCEKIRVKRDRIYNMEI
Ga0243738_1035035Ga0243738_10350352F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243738_1035489Ga0243738_10354893F076189VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWL
Ga0243738_1053498Ga0243738_10534982F092227MNEQKRKRILRVGCLILAGVFLLSVLGSVVLMLLV
Ga0243738_1079358Ga0243738_10793581F059106KIRGILLQIFVWIVDLKVKERLTEHLKKDTKYRRVTIGVNA
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Biomedical Sciences Research Center "Alexander Fleming"
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