NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029775

3300029775: Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-1-220-B



Overview

Basic Information
IMG/M Taxon OID3300029775 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121315 | Gp0152027 | Ga0134843
Sample NameLiquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-1-220-B
Sequencing StatusPermanent Draft
Sequencing CenterChongqing University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size195018578
Sequencing Scaffolds22
Novel Protein Genes29
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin2161
Not Available3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon1
All Organisms → Viruses → Predicted Viral4
Methanogenium → Methanogenium cariaci1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLiquor Fermentation Pit Mud Microbial Communities From Chongqing University, China
TypeEngineered
TaxonomyEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationChina: Luzhou
CoordinatesLat. (o)28.88Long. (o)105.45Alt. (m)N/ADepth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003987Metagenome / Metatranscriptome458Y
F004383Metagenome / Metatranscriptome440Y
F010099Metagenome / Metatranscriptome308Y
F011593Metagenome / Metatranscriptome289Y
F020859Metagenome / Metatranscriptome221Y
F028538Metagenome / Metatranscriptome191Y
F028664Metagenome191Y
F033857Metagenome / Metatranscriptome176Y
F042860Metagenome / Metatranscriptome157Y
F045124Metagenome / Metatranscriptome153Y
F063807Metagenome / Metatranscriptome129N
F064748Metagenome / Metatranscriptome128Y
F074840Metagenome / Metatranscriptome119N
F078879Metagenome / Metatranscriptome116N
F080199Metagenome / Metatranscriptome115N
F088950Metagenome / Metatranscriptome109N
F090569Metagenome / Metatranscriptome108Y
F090570Metagenome / Metatranscriptome108N
F091989Metagenome / Metatranscriptome107Y
F092110Metagenome / Metatranscriptome107Y
F099240Metagenome / Metatranscriptome103N
F101424Metagenome / Metatranscriptome102Y
F103495Metagenome / Metatranscriptome101N
F103498Metagenome / Metatranscriptome101N
F103501Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134843_1000161All Organisms → cellular organisms → Archaea → Euryarchaeota88959Open in IMG/M
Ga0134843_1001940All Organisms → cellular organisms → Bacteria15483Open in IMG/M
Ga0134843_1002231All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes13418Open in IMG/M
Ga0134843_1002709All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin21611101Open in IMG/M
Ga0134843_1003518All Organisms → cellular organisms → Bacteria8364Open in IMG/M
Ga0134843_1003814All Organisms → cellular organisms → Bacteria7734Open in IMG/M
Ga0134843_1003948Not Available7508Open in IMG/M
Ga0134843_1004764Not Available6104Open in IMG/M
Ga0134843_1004813All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon6035Open in IMG/M
Ga0134843_1006663All Organisms → Viruses → Predicted Viral4282Open in IMG/M
Ga0134843_1007244Methanogenium → Methanogenium cariaci3913Open in IMG/M
Ga0134843_1007737All Organisms → Viruses → Predicted Viral3654Open in IMG/M
Ga0134843_1008632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3246Open in IMG/M
Ga0134843_1010977All Organisms → cellular organisms → Archaea2551Open in IMG/M
Ga0134843_1013016All Organisms → Viruses → Predicted Viral2174Open in IMG/M
Ga0134843_1018912All Organisms → Viruses → Predicted Viral1528Open in IMG/M
Ga0134843_1019265All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661501Open in IMG/M
Ga0134843_1020619Not Available1410Open in IMG/M
Ga0134843_1023100All Organisms → cellular organisms → Bacteria1267Open in IMG/M
Ga0134843_1029493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes999Open in IMG/M
Ga0134843_1032565All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.904Open in IMG/M
Ga0134843_1046923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia627Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134843_1000161Ga0134843_100016127F004383MHCDCENPCRECKGDGSECSMDPAECGHAVLPDNLLERAFVARIRADEHRAELKALQDEFNEREDVIEIKRKIDRCEEERHNCIEQAKIAGVSKIGNYLLKIRTRKTRTIVPKLFFAKHGAEAFVECCTVAIGKAEALLGKGTFDDCCEVEVKDIGTTVEYERPEGSE
Ga0134843_1001940Ga0134843_10019403F020859MKKIIAKEVNPAHVDFSFYFDDDGLKSVGGENCAVYIVPADRRRNSGFNMDEYEYIEEQAQDIIDGFHDVNDKWPNGYNSYANYKEVLEYNNVLYSPRKCHLLKEWAEHADTSDTETIAEYLTITTGEEWAVKSFTGYSQGDYCEVVYCIKHYTPEHINEIGKLWLGCGTEFSIDDCYGYFVIDELRWEEGEKLRQYLADCYGCKPDELEIRLYDGEHTVTDYKIMK
Ga0134843_1002231Ga0134843_10022319F090570VIIINEFGNGYIEKVWCNSVTTPQPLKVIPYLKDFKVFFSVKGTEIGRITIGVFVDDELDQMLTTNILVKNKSLAIWFWYPYKRKQMGKHIIQFKIGEVTDRTIDSVTWKYTSDKYIVEV
Ga0134843_1002709Ga0134843_100270911F092110MSCKDYLELKPGMKVKLSYEPWGYKDVNAVIDSVGVDYHYDETHNYGVFHPIIACYVGKYRMTFNGPINWETLVIKPCRKVYVKDLCVGDVIERDEMRGLIEIVSNENVYIRWYDKSCKVTYYTNYRNDIIFENAEIVGHVNLWNL
Ga0134843_1002709Ga0134843_100270918F064748MKRYRFIGNMEDVIPCENMSADCDAVGCKGKVWGQCHFDPKLELLSSGAEYFAEILTEREVIDTVFRVEKDGLFSSGGLNPLFVKNGKIWMKRWQIKNHFKQRTGYNCKTRTSIYLYQEYPEDAEVVEYALVEVKRTPVRKFVEGGE
Ga0134843_1002709Ga0134843_100270919F103501MITDIVLEGVVSYDNKYDLWCVDEDFIENTISEFEGKKVVVTITVI
Ga0134843_1002709Ga0134843_100270921F078879MTPEVSNEVKEGYDILEGIGIVERTESGQYYPTDVGAAIIYAVLCKQMLGAGEDEFKSEESQQVMLNRLEEMDLVEQGDESFVITIEGFTTFFTNLTYGCPCREEFIDWLALATAELAEEME
Ga0134843_1003518Ga0134843_10035182F045124MTDDDLRALIYESRQDAAATRRDIKWIKEALTEMKDANKAQDDRIAEIKARQDRQIGRDGAIAAAISAVVAFFTALASGGWLR
Ga0134843_1003814Ga0134843_10038141F028664MKENSKILIGGQALRNLGSDRYTEDVDFLVNDKSTTDAFINTVGIDYINANGNKFFNEIYNIEKGNIQATPRSLFELKVYAFVQHCQNFNFAKADSCEYDLKFLVRNFNITESKIARKYITNGEYSEIVKIVRSVKF
Ga0134843_1003948Ga0134843_10039484F063807MKPPRTLSVSAALHSRLWLLKIRRKARTLDEVIEQALDALEEQEANDG
Ga0134843_1004764Ga0134843_10047647F011593MRRVTDNNLTAPEWCLGCPDPIYDDRRGEWDWYCRQHSPTGIRCSNVAVLRDRCCRVRDYFARKEATQ
Ga0134843_1004813Ga0134843_100481310F103495MDNLLQFLIDSGILYMIVSTLLTVGIGFIVGKGVSFKEIQDIIGAIEESYEDGYISPDEARKIYKEIEDVIGQDWYIRLFRLFKR
Ga0134843_1004813Ga0134843_10048132F074840MLELNENELAQLNQFIARHERCFDDNKYELTIHLHIIGTGIGCVHKAECENCGECIDLTDYGCW
Ga0134843_1004813Ga0134843_10048138F090569MDYKVCGVFDAEKSKVENVYFNLVDNDKFVTLELVDENGNHVICSNICNIDKQSGKIDTCCNVNSYLGFILDSYGRVTIN
Ga0134843_1006663Ga0134843_10066633F033857MVEIIDLSTLSPKPVIVRIGNGDEIEEIDLTIVPARGTLLLTQATQKFGGWDKIPDDEMIPAIAAICKQSNPKITAEWLETKLTRPQLAGLTAVVQMQAYRHWGGGNRQTPKQEGGAKNP
Ga0134843_1007244Ga0134843_10072443F010099MHNSRLPLSDAVLVITYKYPLPLFSHMTDAKTSFWTPARIGAVIGAVLLVVLLAYAASLPQNKFEDGDLLEPKYAADADLGYWMVDKYDQEVDVYHLLVVMEHPNGTFEWLDGDGIWLPRRAVEGTFTVIGTFDARKANL
Ga0134843_1007737Ga0134843_10077372F101424MDYITALKTIGIIALVVVCIALLFIWYAAFCYIAYVLLGMIGITGFMQTVCGIVLGLFVASLPSVFARK
Ga0134843_1008632Ga0134843_10086324F042860MAGFTREEILKRIEIEDTRIANADRNIEGLILQKNKSLDEQARLFALLETLPTEEPEAGI
Ga0134843_1010977Ga0134843_10109772F103498MDNTETCELQHCRLRTDILCEVQRREEKQDERFLALIEELRHDWKETKKEVTSIKDTMIQGFIALIVAVIGVYVSYLLLNVIGFI
Ga0134843_1013016Ga0134843_10130162F099240VILMKLLFNYSDFHKFPLDACFSTLRLLLIDNFNGVYKDENGKLIAVFDYNETEREQRIIRSASGFLENYGYDLKHHTEIVDSVEHLEFVTKTCGVDYE
Ga0134843_1018912Ga0134843_10189122F003987MIPALPCGTFADSETPAGAFYIAAFEPGDAPHHVGEYRIDVVIRALQALKACGYDDVEVGSIECSDRTHLLLIGLDGEARFGDRQLGCIAVLPVGVD
Ga0134843_1018912Ga0134843_10189124F028538IEIKRKIDRCEEERHNCIEQAKAAGISKIGNYLLKIRTRKTRTVVPKLFFAKHGAEAFVECCTVAIGKAEALLGKSALDDCCEVEVKEIGTTVEYERPEGSE
Ga0134843_1019265Ga0134843_10192651F003987ISMIPALPCGTFADSETPAGAFYIAAFEPSDIPHHVGEYRIETVIRAAEALRTCGYDDVEIGSIERDGKTHLLLIGLDRETRFGDRQMGCIAVLPVEVE
Ga0134843_1020619Ga0134843_10206192F088950MDIDGVLKELADFIEEKVPELDKKVTTIYPETERFAPPTIVIDIVAGRETLIVDGTKTHELVRIAIVSDKKSEINRIFNLITNAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSILKRELDIVVIEFRKRG
Ga0134843_1020619Ga0134843_10206193F080199IMKTVVYGVEETNAKLSQILAVVQDNVDNTLDLFSGDMTKEIKDSAPYDTGRYMSSWFYERKESLKYAIISQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSDRGIIHDVRQIKFIYSIKLGQLIKRVNLIGANISLAGL
Ga0134843_1023100Ga0134843_10231002F042860MTKEEIMKRIEIEDIRVSSNNRNIEGLINQNNRSLDEQARLFVLLEALPAEEPMSEPEAG
Ga0134843_1029493Ga0134843_10294932F042860MTKEEIMKRLEIEDARIASADRNIEGLIKQKNKSLDEQARLWALLDGLPEEQEAGG
Ga0134843_1032565Ga0134843_10325652F091989PFGEFDEQKATLKSLQVSTMALCWIDANGKLVPFDSAEFNAVQKEIAALQGKIDNNSSVLEKLDAKVAELGLTEFSISKLKSQIEKLRSQINQIRAEENDSLRSKWEAVVSLGGNRGTYDALPEVIEARAKAAEKIAPIEAEIMALNAQIRSLESILSKFKR
Ga0134843_1046923Ga0134843_10469232F045124MTDDTTLQAMIYETRQDVRWIKDTLKEIKEANQAQDERIAEIKARQDKQTGRDSAIAVAISAVVAFFTALASGGWLQ
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