| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029680 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114292 | Gp0306342 | Ga0265599 |
| Sample Name | Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_50m (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 69819501 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Canada: Sakinaw lake, British Columbia | |||||||
| Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | N/A | Depth (m) | 50 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004178 | Metagenome / Metatranscriptome | 449 | Y |
| F026446 | Metagenome / Metatranscriptome | 198 | Y |
| F031354 | Metagenome / Metatranscriptome | 182 | Y |
| F046170 | Metagenome / Metatranscriptome | 151 | Y |
| F064398 | Metagenome / Metatranscriptome | 128 | Y |
| F079305 | Metagenome / Metatranscriptome | 116 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0265599_1000595 | Not Available | 4450 | Open in IMG/M |
| Ga0265599_1002350 | Not Available | 2522 | Open in IMG/M |
| Ga0265599_1006237 | Not Available | 1567 | Open in IMG/M |
| Ga0265599_1020000 | Not Available | 804 | Open in IMG/M |
| Ga0265599_1020287 | Not Available | 797 | Open in IMG/M |
| Ga0265599_1020473 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 793 | Open in IMG/M |
| Ga0265599_1037011 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 556 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0265599_1000595 | Ga0265599_10005957 | F031354 | MKTTIDINDILYPIINVPTVKATIDGGVYRNKKPLNSELQDIVIIPLSNFVGEEVMNDAVFMVNCFCKNFANGTPDITNLRPIVNAVVAVIEAYNNTSHYYIFAITNQILLQDIDQKSMSYSSLRIQCFIEK |
| Ga0265599_1002350 | Ga0265599_10023503 | F026446 | MKVTGETFSFIQKEKKSRRGKIPKVFKLSGKRTVTGQNSGELYTKSTDGAIPNL |
| Ga0265599_1006237 | Ga0265599_10062372 | F079305 | VKQMILTVLVCAGVTMAAGFFVQGNMSEAWDKGSLRVRTGPEMAKLWFGLPAHSGITVVAKPDTGAAVTATLNMSATVDLRVPAEYAVTITRDSGDGQWTCRDAAGNPVLLGFGSSVDETRHARLTYVADEDEETWKFTWPREATFLVELFGKAGKVVEEQDLSDSDEFELVGGGSFTLEVVPTEGSGEFSAKKSE |
| Ga0265599_1020000 | Ga0265599_10200001 | F046170 | MIRIEDFGEIAYGGAVTLTEWWDNKRIDQGKIGAKDVFKKASFYTYLGVGLTATLMSVFGWMKRYERWEEHVSHGFLYDLPRFAYGLTKALGAGGKRGSDSSAVQEAQRILNEKMRAKALGSGRTADRSYQQEFEAVAPHAF |
| Ga0265599_1020287 | Ga0265599_10202872 | F046170 | MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKISTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQSHATQRSYQPEFNKTMAW |
| Ga0265599_1020473 | Ga0265599_10204732 | F004178 | MRPTASHAAKSSVGKHTARESEAPNVCDWERARGERP |
| Ga0265599_1037011 | Ga0265599_10370111 | F064398 | FSGVGNAAPEETPSVYYLEYGGLKIDIRAPDQAYPGENITFTVKTEAVVPQIYVKYINVDLYGVVNATTEVILDQISHLKNSSLSSHEVQYNIKIPDNISPGLTYGEVSCEWEALGASFEILSSGFVLTYVKNVALEQLQAEYDELNATHQSILQENTELKSGINEDADSTRNLMYVFIATTVV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |