NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029664

3300029664: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37400



Overview

Basic Information
IMG/M Taxon OID3300029664 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283847 | Ga0245211
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37400
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size116218522
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047125Metagenome / Metatranscriptome150N
F059106Metagenome134N
F078004Metagenome117N
F090514Metagenome108N
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245211_100343All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis65438Open in IMG/M
Ga0245211_100445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii51920Open in IMG/M
Ga0245211_100720All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales30321Open in IMG/M
Ga0245211_101294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia12725Open in IMG/M
Ga0245211_101323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii12288Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245211_100226Ga0245211_10022621F078004LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAITITGMLTSHHDVSLAAQTVLVIGTIFHNTF
Ga0245211_100343Ga0245211_10034363F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0245211_100343Ga0245211_10034364F097172MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGCDKKGYVMDGFSKAAFYKDLNSLPAVKTGKTTINVPAVTSNVKSVSKEKGNPRYESFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMADGDLCQISKTGKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKVEHPEYTDVIEETYEYQRDFVNTIPTTKIKFTTKLKKGQTYVYVINNTLGKTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0245211_100445Ga0245211_10044536F090514MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGTKWFVILLTIVPAGSRARAGSSLPLIPASNIF
Ga0245211_100720Ga0245211_1007201F059106ILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
Ga0245211_101294Ga0245211_1012941F097172MKKNVFKKLMCVVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPASYSKTSFYKDLNSLPAVKIGRTTINVPAVTSNVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPIKEGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGHTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0245211_101323Ga0245211_1013234F047125MDVVLLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRSWWS
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