Sample 3300029661

Basic Information
IMG/M Taxon OID	3300029661 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283893 \| Ga0245258
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37207R1
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300029661 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0133139 | Gp0283893 | Ga0245258

Sample Name

Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37207R1

Sequencing Status

Permanent Draft

Sequencing Center

Beijing Genomics Institute (BGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	125901868
Sequencing Scaffolds	14
Novel Protein Genes	16
Associated Families	16

Dataset Contents

Total Genome Size

125901868

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. MSJ-31	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. MSJ-31

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Ecosystem Assignment (GOLD)

Name

Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal distal gut

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

United Kingdom: London

Coordinates

Lat. (^o)

51.5

Long. (^o)

-0.12

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F042910	Metagenome	157	N
F058154	Metagenome	135	N
F068941	Metagenome	124	N
F073573	Metagenome	120	N
F073574	Metagenome	120	N
F074899	Metagenome / Metatranscriptome	119	N
F075480	Metagenome	119	N
F082714	Metagenome	113	N
F087213	Metagenome	110	N
F089005	Metagenome	109	N
F091068	Metagenome	108	N
F092228	Metagenome	107	N
F099451	Metagenome	103	N
F101191	Metagenome	102	N
F101192	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245258_100197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	115401	Open in IMG/M
Ga0245258_100262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	93027	Open in IMG/M
Ga0245258_100479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	50783	Open in IMG/M
Ga0245258_100515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	46663	Open in IMG/M
Ga0245258_100586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	40304	Open in IMG/M
Ga0245258_100675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33935	Open in IMG/M
Ga0245258_100828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	26237	Open in IMG/M
Ga0245258_100980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21233	Open in IMG/M
Ga0245258_101290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	14170	Open in IMG/M
Ga0245258_101299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14043	Open in IMG/M
Ga0245258_101400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12746	Open in IMG/M
Ga0245258_101467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12088	Open in IMG/M
Ga0245258_107642	Not Available	1361	Open in IMG/M
Ga0245258_113859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. MSJ-31	722	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245258_100197	Ga0245258_10019713	F092228	MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEYKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGLANLWVKGYLIDQLAIS
Ga0245258_100262	Ga0245258_10026276	F073574	MLLPAAVRPYAADVDDTASRVRCAIVLNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQTDDAVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDDMFTWVWVTMRCTRCHAVFRGDLECD
Ga0245258_100479	Ga0245258_10047934	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGAGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGTLAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDARKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKTIEEKAARIES
Ga0245258_100515	Ga0245258_1005152	F082714	MAVGIRFAADAPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQLRAVIETLRKAVEIRSVEAVERKTLARWQF
Ga0245258_100586	Ga0245258_10058610	F075480	MNKTKQEKWQRAYGDTPDSFRQRVASALPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLAPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLTEADTSHLKSCEVQLECRVGVFGKDGKATQWQKEILTATITFK
Ga0245258_100675	Ga0245258_1006755	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRIDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWSEGRRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0245258_100828	Ga0245258_1008286	F087213	MKKFSSVLLAVLLIFSCWTVATAESTDAVSGAPLDNDIDIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0245258_100980	Ga0245258_10098018	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQESGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRTSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVDIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILSQETLAKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245258_101290	Ga0245258_10129015	F089005	LTKSKQRSIIALALLRLVTSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQE
Ga0245258_101299	Ga0245258_1012992	F101192	MTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLARTAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
Ga0245258_101299	Ga0245258_1012995	F073573	MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVHIRPRGGEIEALPRVMLSVYSEGVLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA
Ga0245258_101400	Ga0245258_10140011	F042910	LADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTANRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPAMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
Ga0245258_101400	Ga0245258_1014009	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTMRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGKLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA
Ga0245258_101467	Ga0245258_1014678	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNS
Ga0245258_107642	Ga0245258_1076423	F099451	MEVKNVGQLRKIIENLSDDYEIEMRVSRKLSDEELKECRYPYPYDTEYLTLEFDDIGVYDKVLCLGVTSKINQHSVKEKGD
Ga0245258_113859	Ga0245258_1138592	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGGSNPPSSSNIFRLNRKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029661: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37207R1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences