| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029655 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128792 | Gp0224285 | Ga0206091 |
| Sample Name | Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 32681261 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | desert biome → desert → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 33.3049 | Long. (o) | -116.2547 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F000400 | Metagenome / Metatranscriptome | 1181 | Y |
| F004178 | Metagenome / Metatranscriptome | 449 | Y |
| F004947 | Metagenome / Metatranscriptome | 417 | Y |
| F011252 | Metagenome / Metatranscriptome | 293 | Y |
| F015326 | Metagenome / Metatranscriptome | 255 | Y |
| F018507 | Metagenome / Metatranscriptome | 234 | Y |
| F018997 | Metagenome / Metatranscriptome | 232 | Y |
| F021903 | Metagenome / Metatranscriptome | 216 | Y |
| F033285 | Metagenome / Metatranscriptome | 177 | Y |
| F034481 | Metagenome / Metatranscriptome | 174 | Y |
| F052341 | Metagenome / Metatranscriptome | 142 | Y |
| F063225 | Metagenome / Metatranscriptome | 129 | Y |
| F073141 | Metagenome / Metatranscriptome | 120 | Y |
| F102215 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0206091_102736 | Not Available | 1376 | Open in IMG/M |
| Ga0206091_104053 | All Organisms → cellular organisms → Bacteria | 1126 | Open in IMG/M |
| Ga0206091_105915 | Not Available | 927 | Open in IMG/M |
| Ga0206091_106835 | Not Available | 861 | Open in IMG/M |
| Ga0206091_107615 | Not Available | 814 | Open in IMG/M |
| Ga0206091_107728 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 808 | Open in IMG/M |
| Ga0206091_107743 | Not Available | 807 | Open in IMG/M |
| Ga0206091_109330 | Not Available | 732 | Open in IMG/M |
| Ga0206091_109655 | Not Available | 720 | Open in IMG/M |
| Ga0206091_112590 | Not Available | 631 | Open in IMG/M |
| Ga0206091_113174 | Not Available | 616 | Open in IMG/M |
| Ga0206091_113207 | Not Available | 616 | Open in IMG/M |
| Ga0206091_113749 | All Organisms → cellular organisms → Eukaryota | 604 | Open in IMG/M |
| Ga0206091_117355 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 537 | Open in IMG/M |
| Ga0206091_118140 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 525 | Open in IMG/M |
| Ga0206091_118766 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea | 516 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0206091_102736 | Ga0206091_1027361 | F063225 | SSATTTITVCLSPAPFCGDGVCAGSETALPTAQARCFDCGRLRGVISLAVGQKDQLVNITVSVWADPVNPALYLRNGTAVPAPHFTTISDSKGFFSINNLSFDAGLSTRAAGQAKRRYYFSLSGSFTDRTTGTDLQTELLTLWWNYELTNTQWSGTGPLTNTNNSPSFYFYMTPPFVTADALIRIILSWGNLISNPANSLPDLDLVVAGPVDASSISTFGTGIVNFQNKDLHSTFKVLPYAKLVTDSAQGYGPEVMDFYGQPGALALGFSSSYAPGAAANAYEVWVDRPNSSPNQDSSFTFLFDTNSFIVVYQNDGTTGGNKQVLFDARTNVPYAYGFYNTDPWNKVPAEATLWHIIDLSQSAGGVVFNGFPGENSTDTTATPGAKYGYDGSFFETTKSIPCGHTASRGASPAYCPATLTYPQSKKK |
| Ga0206091_104053 | Ga0206091_1040532 | F000400 | MRDPEIIENELMEMSAILDDTIKFERIVAWCATHPDEVPFALHQLLHRRPKDQSQSPSA |
| Ga0206091_104684 | Ga0206091_1046842 | F018997 | MKNKKSKSLELTLQETKLMEQLRKQPELMERFQTILEISSSADGPIKTADEIEGLLIEEMRRLGNTTMGTWAAGAEERLVKQFKEEHPSARARKKKR |
| Ga0206091_105915 | Ga0206091_1059151 | F034481 | KLLSILSVVCFLVVLAAANHGENEAAQQVVNPADWHGTWTSLNRYGGQTYTCPVGNTLYGVYSNAGFFVGTITDRVVEGVWFEGGRGDRNYYQGSFRITISDDNQEFDGVFNRLTTGNEIRWHESRLGAPYPSNPTLEQCFAPDNTAENVLGSYYRSTETGALAGSTFICKDYWEQIYGSFHSPEGYLAGWSVDDATGFHGYRYDSTGESGAYILRALSRDRVKGFYWRGRLAIQNYPTSKYEAFDRSSFTATLNQCEQVGPGFVERLHGPDYVPYYLVNSSSIVSFSYLTFLIIALTAILF |
| Ga0206091_106835 | Ga0206091_1068351 | F073141 | MATISTNDQKEDNKSESVNISDYLSRLYDITQITDEELNTWNEAYSYKGFDRKKVIMELAKKVPDVKTSQQIILVCGLLGPQRASQVKLLNGRTIASYGIPASGQKGTNNLSCQRITAATADLCAYLLKRLNVPKRLNIACPAWLQFPSAGSITMPQDLRVMHIEFHRRFSTAISGKFNEQIYDQMTVNSYYDRRLNLFENLNPDIMAEAPSHLVPIPAPTFNPNRGDVGPTKTTDSQRFKKQ |
| Ga0206091_107615 | Ga0206091_1076151 | F000344 | MRPIHPHAAESGVGKHTARESESAQACAAGKERVANAHPHKL |
| Ga0206091_107728 | Ga0206091_1077282 | F004178 | MRPKHPHAAESGVGEHTARESEAPNVCRRERARGERP |
| Ga0206091_107743 | Ga0206091_1077431 | F004178 | MRPRHPHAADSGVGEHTARESEAPNVCRRERARGER |
| Ga0206091_109330 | Ga0206091_1093301 | F021903 | VVAGPVDQSSITTFGTGIVNFQNKDQHSSLRVLPYAKLVTDSAQGYGPEVMDFYGQPGQFALGFSSTYAPGAAANAYEIWIDRPNSSPNQDSSFTFLFDTNAFIVIYQNDNVANKQVLFDARTGVPYAYGFYNTDQWNKVPDEATLWHVIDLSQAAGGVLYNGFPGENSTDQTAVAGAKYGYDAKFFESTKSIPCGHTASRGASPAYCPATLTYPQSKKK |
| Ga0206091_109655 | Ga0206091_1096551 | F052341 | QLLRMQIMFGGKNARVMVVMMISILSFFLIQESAAIDCPKDNSQDRIYPGCNCFFEWNDANRVGNWTFEENWMQLNEPGWVAFVSIAGDNTIHLDEARRINEIYIGPNRWDTTRVVLDEDLTVEYDDVPVINSVRGYRQPTGQIRLVIQGKGFGFVSEDIVVTATQVIDNFPDNNVENQITQVYNCEYATLVYRDAQIECNIFTASLYPYSLSVTVAANGHLSEPALISTYLQ |
| Ga0206091_112590 | Ga0206091_1125901 | F021903 | VVAGPVDQSSITTFGTGIVNFQNKDQHSSLRVLPYAKLVTDSAQGYGPEVMDFYGQPGQLALGFSSTYAPGAAANAYEIWVDRPNSSPNQDSSFTFLFDTNAFIVIYQNDNVENKQVLFDARTGVPYAYGFYNTDQWNKVPDEATLWHIIDLSQAAGGVLYNGFPGENSTDQTAVAGAKFGYDAKFFESTKSIPCGHTASRGASPAYCPA |
| Ga0206091_113174 | Ga0206091_1131741 | F102215 | LIKRLTRPMRVAIVILFCAIVAAAFAGVTERDDHISANFWDKYQEPAAHQIKTIVRRSVDQLVNARQTAAVNFTTWCFEYQQYIDQFKWGLAATDPETNTEYFHGIVEDSSTDPAVVVGYIYGYSLDNQRLVQMAVDYNDNGYMRLFSFQFNPRNERYSDAFTVFSNADTTLTPQFLGSPEYTSLTKCA |
| Ga0206091_113207 | Ga0206091_1132071 | F004947 | KSIIVIIFAIAVIALAQPAPPKEPSDFSAYGFVIEWHNDFHRRFKGDIFEDFTNHRQRIDAERHASYGGVITFFRFFDKEREYEYFGQTDMCWQAHFNNTQHPVFEWLEHAHYAGNCHGRHSQGNVKGHLFREHGSESLRREICVADNSTYTPLWIEHHHGRSGRILEFLQFKSGAPDPAVFTLPGSCTKKQEEILA |
| Ga0206091_113749 | Ga0206091_1137491 | F033285 | TNKLSLFVLFAVFVCIATAELTRCPKIHASIENSKVSASWEGFVPFEVISFEWGVSSMKNGELEANICKESPFFHGKSDVLDWTYVRKSTQVQSQYLELKAGENYQVVLRITSRGGKQYWITSSPLSAPEKEPLEETKTVSRNERNGACPTCTQNQPCANCPIDVANRKRAYEETVAERLNKIYGPALFLKPADSVYTAV |
| Ga0206091_117355 | Ga0206091_1173551 | F018507 | TRMNFSAVLILFLGLVAFVYTACVSPPSDLQVCVLPSTARVPQEYANTNADRQLQSYFFFLQSIKAVPTDECSLAYIDFACSQAYPRCAGDAASGLGLPVNTCYFQCSNFVEKCRGQLIGVERPDCGTFSVSPDCTAVSVKLPQDTNGASVFSASLALFSVLALVLVL |
| Ga0206091_118140 | Ga0206091_1181401 | F011252 | HGGQVRSRSCRSGRNFLSQYSFIEPNAAFPLPPTFNFDEYIETEQELWALFPETDGRRVNFVQIGLTAMIYAEAPDRGAELGPDETYILMPCADYTMRPIRMRACRRLTLSEYRMGHLTAIKLVGKVNEAGDVMREIGCQILGEEVIQEAQARLADYGDDQ |
| Ga0206091_118766 | Ga0206091_1187661 | F015326 | NLQMEKCYCDWGEHGGDWCMCLGFFSGNMECCEPCCGKPCNTNDGVYCCLSWFPGCCFAGPKCLAASQNQECAFVNHGVPFLLLLIFIIPVIGILGYVVLWTIETAIRFNLRKQHGIGDTSKWDICDCCGIWFIVPGPCFACQEMRSVPKDYWDWYKAFNDKKFPAETQLE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |