| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029631 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0132976 | Gp0275005 | Ga0238865 |
| Sample Name | Seawater microbial communities from Ross Sea, Antarctic Ocean - 124LC-38360620 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Systems Biology |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 12103951 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C113 | 1 |
| All Organisms → Viruses → Predicted Viral | 3 |
| All Organisms → Viruses | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Seawater Microbial Communities From Ross Sea, Antarctic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Seawater Microbial Communities From Ross Sea, Antarctic Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Southern Ocean: Ross Sea | |||||||
| Coordinates | Lat. (o) | -76.4986 | Long. (o) | -179.9884 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003761 | Metagenome / Metatranscriptome | 470 | Y |
| F023242 | Metagenome | 211 | Y |
| F028004 | Metagenome / Metatranscriptome | 193 | Y |
| F048239 | Metagenome | 148 | N |
| F052205 | Metagenome / Metatranscriptome | 143 | Y |
| F058456 | Metagenome / Metatranscriptome | 135 | Y |
| F065121 | Metagenome | 128 | Y |
| F077807 | Metagenome | 117 | Y |
| F083240 | Metagenome / Metatranscriptome | 113 | N |
| F101213 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0238865_10126 | Not Available | 15720 | Open in IMG/M |
| Ga0238865_10175 | Not Available | 10960 | Open in IMG/M |
| Ga0238865_10194 | All Organisms → cellular organisms → Bacteria | 9483 | Open in IMG/M |
| Ga0238865_10256 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C113 | 7247 | Open in IMG/M |
| Ga0238865_10399 | Not Available | 4025 | Open in IMG/M |
| Ga0238865_10462 | All Organisms → Viruses → Predicted Viral | 3384 | Open in IMG/M |
| Ga0238865_10613 | All Organisms → Viruses → Predicted Viral | 2386 | Open in IMG/M |
| Ga0238865_10692 | All Organisms → Viruses | 2061 | Open in IMG/M |
| Ga0238865_11073 | All Organisms → Viruses → Predicted Viral | 1286 | Open in IMG/M |
| Ga0238865_11859 | Not Available | 720 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0238865_10126 | Ga0238865_1012617 | F065121 | MIKTLIVLILLFNGKVVKEKLYFAKPVTILECLEFADQHMEDIATHFWVKNVMKSGYYLNDGRGTIQGFVCE |
| Ga0238865_10175 | Ga0238865_1017525 | F101213 | MNYNWNEDTVDHFKFESFYESREKIEQRIKEFVELDCYIEDGESEEDLVNDLIETVYKY |
| Ga0238865_10194 | Ga0238865_101947 | F077807 | MSKTGFTDWLHKEIKLQQQQRRDEMAKIIQHKGAMIVDQAQKKCILDVFNAGREVFEEFDIMHVTAWDLRQLQDLIDDMKDTFGIVPKVHKYKNDDGETIPAHFQDHVWSDDPRAYKRKD |
| Ga0238865_10256 | Ga0238865_102563 | F048239 | MDDIQLKDQDIAELFNRMPEAKREAIIIAQERMIKELRDHNLELSKKNLNGVKKVKAGV |
| Ga0238865_10399 | Ga0238865_103994 | F003761 | MAALVELATTDLWGHEPCWYVSEMNRPARDSKSVRRYQTITVIRNDRRVKLERDIGDARLFGEEFQLICGVPDGKGGGEAMYTVDEAIRMAQDMNLTPPPKTEVKPRDWKKIFWDNVEERNKWKKGQSIFGPNYKKERT |
| Ga0238865_10462 | Ga0238865_104622 | F058456 | MNKKEILYLNASHQEVVEVLMDDVKKIMYYATEDEIAGKYQDFLNILDSVYLYSNNFHDTTLKIEGDDGVMAEFIFLIPNMLFYTAIGFITGLKTNENGEVMSIHLEKIGSLCENSTGELADVLIDATDKKRLLDDMLESETIKN |
| Ga0238865_10613 | Ga0238865_106136 | F028004 | FKITNLKSKVVQYMNESEKEQFFTKNSLGNYKRENVQELDRVRYNKKLHDFAFSVGLLAVFTVLLFLMCGTLGFIDSLIF |
| Ga0238865_10692 | Ga0238865_106922 | F083240 | MMHERELIHDAKKQAKRYGGETAKNDKKLIYDAKGAIHRTDMEKKGGHPLSKHWHNNR |
| Ga0238865_11073 | Ga0238865_110733 | F052205 | MSLSNQDIDELFDGKPSELTYSQWLTIEGNIDFTSLTTTMKADILNRINDLSEEEAEVIITKLYNNRYEKDPQKQWLRMLKDGVFNYRDF |
| Ga0238865_11859 | Ga0238865_118592 | F023242 | MKDDFRPSAAQPNPPEDKRTYTTHKEHGEDMSHENETTITSEPREDRGALDLTFLIEEHKKQIWDYKRKESEWIKTDNILQGSKKIIDELSTKLVGLARRIQELEYDNATYKKEIEKMLADKKV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |