NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029567

3300029567: Human fecal microbial communities from Shanghai, China - P013V6



Overview

Basic Information
IMG/M Taxon OID3300029567 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133133 | Gp0283509 | Ga0244886
Sample NameHuman fecal microbial communities from Shanghai, China - P013V6
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size186932566
Sequencing Scaffolds8
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → environmental samples → Alistipes putredinis CAG:671
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F057001Metagenome137Y
F062845Metagenome130N
F067720Metagenome125Y
F067845Metagenome125N
F068855Metagenome124N
F073656Metagenome120N
F075481Metagenome119N
F077313Metagenome117N
F078005Metagenome117N
F089590Metagenome109N
F089591Metagenome109N
F090514Metagenome108N
F102167Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244886_100170Not Available84485Open in IMG/M
Ga0244886_100206All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium73267Open in IMG/M
Ga0244886_100321All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes57632Open in IMG/M
Ga0244886_107542All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4007Open in IMG/M
Ga0244886_115225All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2034Open in IMG/M
Ga0244886_121455All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → environmental samples → Alistipes putredinis CAG:671425Open in IMG/M
Ga0244886_125090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes1204Open in IMG/M
Ga0244886_140601All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales689Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244886_100170Ga0244886_10017015F077313MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADDVNARTWTDTYDKNIAQRQGYQSRILQALANTDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0244886_100170Ga0244886_10017092F078005MVKAEDDGFEYGGKVVFYKEDDDSYEIWAKSIEMAMKVEANAIASLDDKTFACLMGEVYEQKFTKAIMMSEDEDDEDN
Ga0244886_100206Ga0244886_10020618F075481MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIEHKDVDDKKESRWPIAVTSISVLLILLGLIYLLKKMKVL
Ga0244886_100206Ga0244886_10020619F089590MKDKDMIERVGALWNIALAYGTSCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLIKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0244886_100206Ga0244886_10020622F042095MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPYDMWNYFDINTLPFFEVDKINPNITDFYFLDGWVSGERRTGWNDDNMSGRGLEHLTGFIAAHSNSLRMDKLPDYIYEMRAITWFNVNGSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWRIKPE
Ga0244886_100206Ga0244886_10020628F089591MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNEVSHIDDPESTSFGLPDDYLWFSNIKGSFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK
Ga0244886_100206Ga0244886_10020658F102167MDINQIKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIESYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
Ga0244886_100206Ga0244886_10020667F057001MPIQVPRARANLMTSKDLNKVQNEVKKASEKTLTGAVKAWCNLFKSGKEIDEILKDNDIKVDKAIVPALVALARDKEVVIQLCKDILPRVDETFCAYKEIERVYFDKQDQDRNTKLSEDKVAEISITGKAHKRFGYNEPIEYEGGVYYEVFNGSDKRIVKCAVPIKRYTFALIAKCVTYYLTHPKNER
Ga0244886_100321Ga0244886_10032192F067720MASITYEHPGGFTEMYAAQKQFRDITKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSHSLSASVART
Ga0244886_107542Ga0244886_1075424F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRARAGSSL
Ga0244886_115225Ga0244886_1152251F067845LAGVLALGVLTACSGLGSVNAGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNAFLYWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244886_121455Ga0244886_1214552F073656MEQEQDQEQMQGALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGR
Ga0244886_125090Ga0244886_1250901F068855VPAVEAQGPQVRKSLAPQGLQAEKEMENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0244886_140601Ga0244886_1406012F062845KWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRACT
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