NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029543

3300029543: Human fecal microbial communities from Shanghai, China - P083V1



Overview

Basic Information
IMG/M Taxon OID3300029543 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133133 | Gp0283612 | Ga0244989
Sample NameHuman fecal microbial communities from Shanghai, China - P083V1
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size160048083
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P93121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F059106Metagenome134N
F062845Metagenome130N
F067845Metagenome125N
F070093Metagenome123N
F080163Metagenome115N
F087334Metagenome110N
F087336Metagenome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244989_100369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii67501Open in IMG/M
Ga0244989_100890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii30040Open in IMG/M
Ga0244989_101549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales14945Open in IMG/M
Ga0244989_107783All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2639Open in IMG/M
Ga0244989_110814All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae1888Open in IMG/M
Ga0244989_112646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1607Open in IMG/M
Ga0244989_136842All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium535Open in IMG/M
Ga0244989_138963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244989_100369Ga0244989_10036962F026489MRSAGKVLLAEGCSLLVAKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0244989_100890Ga0244989_10089012F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAELLDDAAGHSEMGAAFIDYNGTAYVVAVFR
Ga0244989_101549Ga0244989_10154918F059106MHAIVWKIRMILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0244989_107783Ga0244989_1077834F070093FESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPNLLQNIHRM
Ga0244989_110814Ga0244989_1108143F080163MKTIKFLQESFETKERFQQEISIKYSYNRNTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCNAKQFLEIINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0244989_112646Ga0244989_1126463F087334PFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0244989_136842Ga0244989_1368422F087336VILSDTPISSSMHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIRDDAIGHGRVSDRILAEIEDNHMRERGTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0244989_138963Ga0244989_1389631F062845MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPP
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