NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029530

3300029530: Human fecal microbial communities from Shanghai, China - P057V6



Overview

Basic Information
IMG/M Taxon OID3300029530 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133133 | Gp0283585 | Ga0244962
Sample NameHuman fecal microbial communities from Shanghai, China - P057V6
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size133009621
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena6
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056309Metagenome137N
F067845Metagenome125N
F070093Metagenome123N
F076064Metagenome118N
F078693Metagenome116N
F089054Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244962_100023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii236651Open in IMG/M
Ga0244962_100112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena127845Open in IMG/M
Ga0244962_100253Not Available85439Open in IMG/M
Ga0244962_100313All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena74939Open in IMG/M
Ga0244962_100321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena73855Open in IMG/M
Ga0244962_100651All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena42160Open in IMG/M
Ga0244962_100970All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena26641Open in IMG/M
Ga0244962_102843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6662Open in IMG/M
Ga0244962_103548All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena4939Open in IMG/M
Ga0244962_123878All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes556Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244962_100023Ga0244962_100023226F078693MVLAPVRGAERFFIKANCSLLMSKENQKSTSDFDALDPRERGCSPLSDPEGEVE
Ga0244962_100112Ga0244962_100112138F056309TKRTCLRRTPSLSVVPLLLGGSDSLNVSYGMEPEQEALSIVSFKD
Ga0244962_100253Ga0244962_100253107F089054MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLRDILQIPLTDITIIDIISLP
Ga0244962_100313Ga0244962_10031373F070093VCRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLTELNPNFMEANQ
Ga0244962_100321Ga0244962_10032171F070093CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKLNL
Ga0244962_100651Ga0244962_1006511F056309TKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSTVSFKD
Ga0244962_100970Ga0244962_1009701F070093EFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPN
Ga0244962_102843Ga0244962_1028432F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPNDVTVALPLDSTAMTAQLYAPQADSAAAKLLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244962_103548Ga0244962_1035481F070093FESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPYPL
Ga0244962_123878Ga0244962_1238781F076064FRHHISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
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