| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029512 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133130 | Gp0283421 | Ga0244798 |
| Sample Name | Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005365-24 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 163142311 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Shanghai | |||||||
| Coordinates | Lat. (o) | 31.2123446 | Long. (o) | 121.4684853 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044554 | Metagenome | 154 | N |
| F056682 | Metagenome | 137 | Y |
| F071325 | Metagenome | 122 | N |
| F078693 | Metagenome | 116 | N |
| F090513 | Metagenome | 108 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0244798_103793 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 6282 | Open in IMG/M |
| Ga0244798_104222 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 5551 | Open in IMG/M |
| Ga0244798_104974 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 4572 | Open in IMG/M |
| Ga0244798_120623 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 819 | Open in IMG/M |
| Ga0244798_129371 | Not Available | 535 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0244798_103793 | Ga0244798_1037931 | F071325 | LALLSDSSIIISKVVLFVKHFFDIFLSFPNPLLKAFHLHAVRFPAAFLLVHRFYLDFEELLSCATAYL |
| Ga0244798_104222 | Ga0244798_1042221 | F056682 | ETVKTQSRAGKVVNQLIGQGEMYSASFMAFPSKNRGTFPFQELGKIHENQKVL |
| Ga0244798_104974 | Ga0244798_1049743 | F044554 | VLAGRFIPVSCASIARLFPCRTEIARCFTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYHFNSHRYCFSAFLVL |
| Ga0244798_120623 | Ga0244798_1206232 | F090513 | MAKYVRKMEWKLLRIKHILYMRPFGALKIAPQSIGNKNGTKAVLQGWAAAFVPYMLSFT |
| Ga0244798_129371 | Ga0244798_1293712 | F078693 | MVLALVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |