| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029500 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133130 | Gp0283416 | Ga0244793 |
| Sample Name | Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005360-15 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 61581981 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Shanghai | |||||||
| Coordinates | Lat. (o) | 31.2123446 | Long. (o) | 121.4684853 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032286 | Metagenome / Metatranscriptome | 180 | Y |
| F044555 | Metagenome / Metatranscriptome | 154 | N |
| F052660 | Metagenome | 142 | N |
| F060985 | Metagenome / Metatranscriptome | 132 | N |
| F067844 | Metagenome | 125 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0244793_100390 | All Organisms → cellular organisms → Bacteria | 21979 | Open in IMG/M |
| Ga0244793_100413 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia | 20563 | Open in IMG/M |
| Ga0244793_100792 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 10043 | Open in IMG/M |
| Ga0244793_113830 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 736 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0244793_100390 | Ga0244793_10039031 | F044555 | MKTTNPSSRITLSQNGNQILSCKVYKEPNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR |
| Ga0244793_100390 | Ga0244793_10039036 | F060985 | MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDSRLFGYWFPPYKKYIPHRIKVLRLALKDLERIKEEYGKD |
| Ga0244793_100413 | Ga0244793_10041320 | F067844 | MNTLAAETASAWYLILNRKLQTLPFYKAQLSSPLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP |
| Ga0244793_100792 | Ga0244793_10079211 | F052660 | MCILRVLPENTPEKIGQERAGTERSVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFACWWPVAAGHSRSADALPGKLNS |
| Ga0244793_113830 | Ga0244793_1138302 | F032286 | VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIILNGKRRSLLNSTLFLADNHTRQKAISPFSLALIFTFDFADLSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQLSTSHESPSQLRMKHRWPGAARPAAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |