| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029426 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133095 | Gp0281905 | Ga0242789 |
| Sample Name | Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 203314247 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F047126 | Metagenome | 150 | N |
| F056309 | Metagenome | 137 | N |
| F059106 | Metagenome | 134 | N |
| F068811 | Metagenome | 124 | N |
| F068855 | Metagenome | 124 | N |
| F070093 | Metagenome | 123 | N |
| F073656 | Metagenome | 120 | N |
| F074899 | Metagenome / Metatranscriptome | 119 | N |
| F078004 | Metagenome | 117 | N |
| F078822 | Metagenome | 116 | N |
| F088914 | Metagenome | 109 | N |
| F088920 | Metagenome | 109 | Y |
| F088921 | Metagenome | 109 | N |
| F090513 | Metagenome | 108 | N |
| F101355 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0242789_100068 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 198834 | Open in IMG/M |
| Ga0242789_100085 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 183113 | Open in IMG/M |
| Ga0242789_100128 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 151431 | Open in IMG/M |
| Ga0242789_100446 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 68509 | Open in IMG/M |
| Ga0242789_100454 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 67650 | Open in IMG/M |
| Ga0242789_100497 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques | 61935 | Open in IMG/M |
| Ga0242789_100510 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 60668 | Open in IMG/M |
| Ga0242789_100552 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 55748 | Open in IMG/M |
| Ga0242789_100712 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 44830 | Open in IMG/M |
| Ga0242789_101214 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 24191 | Open in IMG/M |
| Ga0242789_101530 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 18466 | Open in IMG/M |
| Ga0242789_101832 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 14934 | Open in IMG/M |
| Ga0242789_103838 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 6246 | Open in IMG/M |
| Ga0242789_107324 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3253 | Open in IMG/M |
| Ga0242789_107940 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 2997 | Open in IMG/M |
| Ga0242789_149931 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0242789_100068 | Ga0242789_100068178 | F068855 | VPTVEAKGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW |
| Ga0242789_100085 | Ga0242789_10008518 | F073656 | MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH |
| Ga0242789_100128 | Ga0242789_10012834 | F088914 | VGRILPVCSGFFVFWSRKEGVNYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK |
| Ga0242789_100446 | Ga0242789_10044648 | F090513 | MLKIFAMAKYVRKMEWILLHIKHILYMQPFGVLKIAPQPQSIGNKNGTKAVLQGWAAAFVPYMLSFTYIKGRNTD |
| Ga0242789_100454 | Ga0242789_10045418 | F047126 | VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSSLELPCILCSLLRYFHILSKKLQKTC |
| Ga0242789_100497 | Ga0242789_1004971 | F059106 | HASVWKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV |
| Ga0242789_100510 | Ga0242789_10051051 | F078822 | LSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL |
| Ga0242789_100552 | Ga0242789_10055219 | F088921 | LGATIRLYKIGAGENHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSES |
| Ga0242789_100712 | Ga0242789_10071243 | F070093 | CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNSK |
| Ga0242789_101214 | Ga0242789_10121422 | F070093 | NFESLLLAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN |
| Ga0242789_101530 | Ga0242789_1015302 | F074899 | MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSK |
| Ga0242789_101832 | Ga0242789_1018321 | F056309 | RRMPSLSVVPLLLGDSDSLTVSYGMEPEQEALSIVSFKD |
| Ga0242789_103838 | Ga0242789_1038387 | F068811 | MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSASQYCNKKAAVLLILNENVSETLCIFSIDETNCCRI |
| Ga0242789_107324 | Ga0242789_1073242 | F101355 | MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKKACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA |
| Ga0242789_107940 | Ga0242789_1079404 | F088920 | LFVKWNPKNHHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLAAFSLHTSPKISGQTSLYQPWLSPYCLFKD |
| Ga0242789_124799 | Ga0242789_1247992 | F078004 | MVLFPVCFLFFCKSSTGRLSAVAGSAALDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKALTAGTVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF |
| Ga0242789_149931 | Ga0242789_1499312 | F088920 | VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAIPLLFVPTLFSARLTAFSLHTSPKISGQTSLHQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |