NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029424

3300029424: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_27_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029424 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282950 | Ga0243789
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_27_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size188527198
Sequencing Scaffolds6
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F029444Metagenome188Y
F042936Metagenome157N
F052660Metagenome142N
F074964Metagenome119N
F090484Metagenome108N
F090515Metagenome108N
F098313Metagenome104N
F099406Metagenome103N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243789_1000051Not Available151437Open in IMG/M
Ga0243789_1001244All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae22129Open in IMG/M
Ga0243789_1001348All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales20452Open in IMG/M
Ga0243789_1001954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii14192Open in IMG/M
Ga0243789_1037185Not Available766Open in IMG/M
Ga0243789_1046252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales631Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243789_1000051Ga0243789_100005131F090484MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0243789_1000051Ga0243789_10000514F074964MITKKNVNKLQNAVIKENAANLVGAVKLYNALFSNGSDLKSICKALEIPAEYAVKVAALAKDKKRLVTVCSQMLPKVDDIFVKFTLYSKVYKDTNVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESTQQ
Ga0243789_1000051Ga0243789_100005150F099406MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASIETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSTYLDLSIFPSTSTSGTLDEDSYAKVMDAYNNRITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSEEDVSGSYIDIEMVTYIVAQDKTYRAIANTATLSNAMLSYLKFMAKTPKVVTTLASLPIDAHNIIANVASATNLSMAVSSDDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA
Ga0243789_1000051Ga0243789_100005188F098313MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENVELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE
Ga0243789_1001244Ga0243789_100124410F090515VTTCCKAGHKTTLQGTAPGRVACLEFAEGEKRKTNIAADYAVKVPAFTALLCRYIGSIRTFLKS
Ga0243789_1001348Ga0243789_10013488F052660MCILHVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPVAAGHIRSADALPGKSNS
Ga0243789_1001954Ga0243789_10019541F026489TPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0243789_1006820Ga0243789_10068205F101355MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTSFGFQIIFAKSFFHMSFFSFLKFI
Ga0243789_1037185Ga0243789_10371852F042936KTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0243789_1046252Ga0243789_10462523F029444MEVSEQLTGFELEALLFWTVSNLQCPFREDYSLKKSGIIAEKESQILGCRFVGFD
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