NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029413

3300029413: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_29_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029413 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282953 | Ga0243792
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_29_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size164463176
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039198Metagenome164Y
F052660Metagenome142N
F059106Metagenome134N
F062845Metagenome130N
F067845Metagenome125N
F071325Metagenome122N
F078822Metagenome116N
F088914Metagenome109N
F089053Metagenome109Y
F090515Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243792_1000036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales162078Open in IMG/M
Ga0243792_1000902All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae26768Open in IMG/M
Ga0243792_1001335All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales17885Open in IMG/M
Ga0243792_1001483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales16073Open in IMG/M
Ga0243792_1003238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6531Open in IMG/M
Ga0243792_1003308All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6385Open in IMG/M
Ga0243792_1003834All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae5384Open in IMG/M
Ga0243792_1006639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2957Open in IMG/M
Ga0243792_1007615All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2556Open in IMG/M
Ga0243792_1024015Not Available938Open in IMG/M
Ga0243792_1032859All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales731Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243792_1000036Ga0243792_1000036158F059106VILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0243792_1000902Ga0243792_10009021F078822CLLSSRTAQSLYQRSYFLSSTFFDIFLSFPNAFLKAFHPHAVQFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243792_1001335Ga0243792_10013357F052660MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPVAAGHIRSADALPGKSNS
Ga0243792_1001483Ga0243792_100148316F078822NAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0243792_1003238Ga0243792_10032388F071325RFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKVFHPHAVRFPAAFLLVHRFYLAFKELLSCATAYL
Ga0243792_1003308Ga0243792_10033085F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLRVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYGSGCYGVPEDVTVALLLDDSAAMTARLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243792_1003834Ga0243792_10038341F090515VRTCCKASPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0243792_1006639Ga0243792_10066392F089053LCRAKRALFAFSVKLERVVDGCRPAKGCIRKWIHGFAYGQPELSTAEEINVKNMEVSL
Ga0243792_1007615Ga0243792_10076152F062845MEKTPFILNEKFRSDNNEQRKEHFQKEFERYIVDELSDTAPSKSCA
Ga0243792_1024015Ga0243792_10240151F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENLKNPGEFIVFSAWYAAKALEMDVK
Ga0243792_1032859Ga0243792_10328592F039198MQITSCEIANSKYIQIYLTEEELEKQETKELIKRYKQEKYSVAIFVSGKENYPEILEKIVTKQVELDKNVC
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