| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029407 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133117 | Gp0282925 | Ga0243764 |
| Sample Name | Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_27_stool_1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 158496013 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029444 | Metagenome | 188 | Y |
| F047125 | Metagenome / Metatranscriptome | 150 | N |
| F056309 | Metagenome | 137 | N |
| F068811 | Metagenome | 124 | N |
| F070093 | Metagenome | 123 | N |
| F074899 | Metagenome / Metatranscriptome | 119 | N |
| F078693 | Metagenome | 116 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0243764_100128 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 97998 | Open in IMG/M |
| Ga0243764_100852 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 25097 | Open in IMG/M |
| Ga0243764_100999 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 21993 | Open in IMG/M |
| Ga0243764_102361 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 10085 | Open in IMG/M |
| Ga0243764_102837 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 8437 | Open in IMG/M |
| Ga0243764_108333 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2723 | Open in IMG/M |
| Ga0243764_108828 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2560 | Open in IMG/M |
| Ga0243764_114531 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1486 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0243764_100128 | Ga0243764_10012869 | F068811 | MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI |
| Ga0243764_100852 | Ga0243764_1008521 | F056309 | GTKRTCLRRTPSLSVVPLFLGGSDSLSVSYGMEPEQEALSIVSFKD |
| Ga0243764_100999 | Ga0243764_1009991 | F070093 | FCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPN |
| Ga0243764_102361 | Ga0243764_10236116 | F029444 | MEVSGQLTGFEREDLMSWTASNLQRPLREDVSLEISGIIAEKESQILGRRFVGFDGPKKAAPFFNF |
| Ga0243764_102837 | Ga0243764_1028371 | F056309 | RSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD |
| Ga0243764_108333 | Ga0243764_1083331 | F078693 | MWNIGSFSFERLHAPVRGGERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS |
| Ga0243764_108828 | Ga0243764_1088283 | F047125 | MDVVLLLMVLGVMLSGFRAADAMDHMRKEIIRQEGKRRGWWS |
| Ga0243764_114531 | Ga0243764_1145314 | F074899 | MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSTEKP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |