NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029381

3300029381: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_29_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029381 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283063 | Ga0243902
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_29_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size296471018
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F029444Metagenome188Y
F047126Metagenome150N
F052660Metagenome142N
F076190Metagenome118Y
F088921Metagenome109N
F089053Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243902_1005996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae7657Open in IMG/M
Ga0243902_1006504All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7026Open in IMG/M
Ga0243902_1008431All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5328Open in IMG/M
Ga0243902_1027544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1559Open in IMG/M
Ga0243902_1042439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741029Open in IMG/M
Ga0243902_1045269All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae969Open in IMG/M
Ga0243902_1051008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii865Open in IMG/M
Ga0243902_1083423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii544Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243902_1005996Ga0243902_10059967F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRCFHILSKKLQKTC
Ga0243902_1006504Ga0243902_10065042F052660MCILRILPENTPEKIGQERAGTEWTVVKSKIRLRIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS
Ga0243902_1008431Ga0243902_10084318F076190VRTAGGSITISAKNVFTAASRASGHVWSLVRITVPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0243902_1027544Ga0243902_10275442F089053MEGPRPDKFAFGVRIGRVVDGCRPAKGCITKRIHRSANGQPELSTAEEVNVKNMEAFL
Ga0243902_1042439Ga0243902_10424392F088921LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMQSK
Ga0243902_1045269Ga0243902_10452691F029444MDVSGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDGPKKAAPFF
Ga0243902_1051008Ga0243902_10510082F026489NDLKCPPLGQEDAAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0243902_1083423Ga0243902_10834232F026489GCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.