NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029365

3300029365: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 064_3_10_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029365 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283027 | Ga0243866
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 064_3_10_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size307276492
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F032286Metagenome / Metatranscriptome180Y
F047125Metagenome / Metatranscriptome150N
F047126Metagenome150N
F055715Metagenome138N
F068811Metagenome124N
F068855Metagenome124N
F076189Metagenome118N
F076190Metagenome118Y
F078004Metagenome117N
F081354Metagenome114Y
F087336Metagenome110N
F090513Metagenome108N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243866_1000035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales256512Open in IMG/M
Ga0243866_1000106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae158521Open in IMG/M
Ga0243866_1000147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae131555Open in IMG/M
Ga0243866_1000865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae43870Open in IMG/M
Ga0243866_1001090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae36025Open in IMG/M
Ga0243866_1001100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella35856Open in IMG/M
Ga0243866_1001252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii32408Open in IMG/M
Ga0243866_1001737All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia23947Open in IMG/M
Ga0243866_1003339All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii13134Open in IMG/M
Ga0243866_1003537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae12351Open in IMG/M
Ga0243866_1010214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4390Open in IMG/M
Ga0243866_1013311All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia3372Open in IMG/M
Ga0243866_1024329All Organisms → cellular organisms → Bacteria1851Open in IMG/M
Ga0243866_1027072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1667Open in IMG/M
Ga0243866_1039900All Organisms → cellular organisms → Bacteria1124Open in IMG/M
Ga0243866_1049935Not Available897Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243866_1000035Ga0243866_1000035200F032286MRSMVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNHTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI
Ga0243866_1000106Ga0243866_100010686F087336MHCLLRGMVAELEQVPKAFRAAVNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0243866_1000147Ga0243866_1000147130F068855MRKSLAAQGLQAEKESENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0243866_1000865Ga0243866_10008655F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLAQNPAALVETDDIFDISDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAVASQSKSAYILSFLESPCILCSLLRYFHILSKKLQKTC
Ga0243866_1001090Ga0243866_100109018F090513MLKIFAIAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA
Ga0243866_1001100Ga0243866_100110027F099269VGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0243866_1001252Ga0243866_10012524F047125MDVVLLLMVLGVMLSGFRAADALDHMRKEILQQEGKRRGWWS
Ga0243866_1001737Ga0243866_10017372F029444MEVSEQLTGFELEDLKFWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF
Ga0243866_1003339Ga0243866_10033398F068811MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0243866_1003537Ga0243866_10035371F055715LTKANKFDKMNELLIERMAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0243866_1010214Ga0243866_10102144F076189LKKRINHFKTMQCPAGCVICRALFFYFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELLACFDLHAIQSAQKQLHMLCNFHENTFGLLIFYTNYAII
Ga0243866_1013311Ga0243866_10133114F068855VEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0243866_1017020Ga0243866_10170202F078004MIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGMLAAHHDITLAAQTILIIGTIFHNTF
Ga0243866_1024329Ga0243866_10243291F076190TISAKNVFTAASRVSGRVWSLVRITVPNDLKSVRIRVRKPQNNSLYPHFQGEPL
Ga0243866_1027072Ga0243866_10270722F081354LVRENQQSSAHNFVKDFSLIFLKFSRRSPLKKGAATENPLEYGKTEVQILFEPLQATISSMELPKNFENKKLPNTLR
Ga0243866_1039900Ga0243866_10399001F055715LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELI
Ga0243866_1049935Ga0243866_10499352F055715LTKADEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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