| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029348 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133117 | Gp0282961 | Ga0243800 |
| Sample Name | Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_29_stool_2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 176644158 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 19 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044554 | Metagenome | 154 | N |
| F047126 | Metagenome | 150 | N |
| F056309 | Metagenome | 137 | N |
| F067845 | Metagenome | 125 | N |
| F068811 | Metagenome | 124 | N |
| F070093 | Metagenome | 123 | N |
| F076064 | Metagenome | 118 | N |
| F078004 | Metagenome | 117 | N |
| F078822 | Metagenome | 116 | N |
| F087335 | Metagenome | 110 | N |
| F088914 | Metagenome | 109 | N |
| F088920 | Metagenome | 109 | Y |
| F088921 | Metagenome | 109 | N |
| F090513 | Metagenome | 108 | N |
| F097493 | Metagenome | 104 | Y |
| F101356 | Metagenome | 102 | N |
| F105374 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0243800_100049 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 206073 | Open in IMG/M |
| Ga0243800_100055 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 199931 | Open in IMG/M |
| Ga0243800_100121 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 138608 | Open in IMG/M |
| Ga0243800_100311 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 83405 | Open in IMG/M |
| Ga0243800_100411 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 68523 | Open in IMG/M |
| Ga0243800_100496 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 58916 | Open in IMG/M |
| Ga0243800_100524 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 56617 | Open in IMG/M |
| Ga0243800_100746 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 42458 | Open in IMG/M |
| Ga0243800_100844 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 38237 | Open in IMG/M |
| Ga0243800_100896 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 35923 | Open in IMG/M |
| Ga0243800_101729 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 16862 | Open in IMG/M |
| Ga0243800_101967 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 14464 | Open in IMG/M |
| Ga0243800_103012 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 8069 | Open in IMG/M |
| Ga0243800_103175 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 7521 | Open in IMG/M |
| Ga0243800_104352 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 4828 | Open in IMG/M |
| Ga0243800_107593 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 2406 | Open in IMG/M |
| Ga0243800_130093 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 640 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0243800_100049 | Ga0243800_1000491 | F056309 | TCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVFFKD |
| Ga0243800_100055 | Ga0243800_100055203 | F070093 | LLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPN |
| Ga0243800_100121 | Ga0243800_100121116 | F088921 | LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRNKMWSK |
| Ga0243800_100311 | Ga0243800_10031179 | F056309 | PSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD |
| Ga0243800_100411 | Ga0243800_10041166 | F068811 | MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSASQYCNKKAAVLLILNENVSEALCIFSIDKTNCCRI |
| Ga0243800_100496 | Ga0243800_10049613 | F088914 | VGRILPVCSGFFVFWGRKEGANYQISVKSFSTLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK |
| Ga0243800_100523 | Ga0243800_10052346 | F078004 | LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF |
| Ga0243800_100524 | Ga0243800_10052425 | F047126 | VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC |
| Ga0243800_100746 | Ga0243800_10074618 | F087335 | MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTEETVEEVYQRASNYDFDEPCAGNMPS |
| Ga0243800_100844 | Ga0243800_10084434 | F078822 | QRSYFLSSTFFDIFLSFPNAFLKTFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL |
| Ga0243800_100896 | Ga0243800_10089620 | F044554 | VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL |
| Ga0243800_101729 | Ga0243800_1017294 | F097493 | MYKFYSKNGQAQFYEHGVEIDGTVYGIHADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIQHTGITFEQPTAEQLEQIQAKTFDSMSELKQHVQSVMSGDETMSQDEINAMLLLQIAELKAGVSNE |
| Ga0243800_101967 | Ga0243800_10196710 | F088920 | VSANLHHYPAFWAGLILHLILHFSQKVAIFVPKRAISLLFVPKLFFAGLSVLFPQTSPKISGQTSLYQPWLSPYCLFKD |
| Ga0243800_103012 | Ga0243800_1030125 | F090513 | MEWKLLHIKHILYMRPFGALKITPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYIHLLI |
| Ga0243800_103175 | Ga0243800_1031755 | F067845 | MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLNLVYTVALDADGNMGYTDNLNHFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR |
| Ga0243800_104352 | Ga0243800_1043521 | F056309 | RMCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD |
| Ga0243800_107593 | Ga0243800_1075932 | F076064 | LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTHLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY |
| Ga0243800_110342 | Ga0243800_1103423 | F101356 | VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSDSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ |
| Ga0243800_130093 | Ga0243800_1300931 | F105374 | LLVALCIWKVVAAQTPYGEMPERFRPDALPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIDNQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |