Sample 3300029342

Overview

Basic Information
IMG/M Taxon OID	3300029342 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0282887 \| Ga0243726
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_27_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	264744967
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F042910	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F078004	Metagenome	117	N
F081453	Metagenome	114	N
F101193	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F032286

Metagenome / Metatranscriptome

180

F039198

Metagenome

164

F042910

Metagenome

157

F044555

Metagenome / Metatranscriptome

154

F056309

Metagenome

137

F059106

Metagenome

134

F062845

Metagenome

130

F067720

Metagenome

125

F078004

Metagenome

117

F081453

Metagenome

114

F101193

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243726_1000182	Not Available	83808	Open in IMG/M
Ga0243726_1003192	All Organisms → cellular organisms → Bacteria	10986	Open in IMG/M
Ga0243726_1012055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3394	Open in IMG/M
Ga0243726_1013957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2986	Open in IMG/M
Ga0243726_1025598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1706	Open in IMG/M
Ga0243726_1028667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1534	Open in IMG/M
Ga0243726_1042021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1060	Open in IMG/M
Ga0243726_1053200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	844	Open in IMG/M
Ga0243726_1062187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	727	Open in IMG/M
Ga0243726_1078743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	578	Open in IMG/M
Ga0243726_1086471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	525	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0243726_1000182

Not Available

83808

Open in IMG/M

Ga0243726_1003192

All Organisms → cellular organisms → Bacteria

10986

Open in IMG/M

Ga0243726_1012055

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

3394

Open in IMG/M

Ga0243726_1013957

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2986

Open in IMG/M

Ga0243726_1025598

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1706

Open in IMG/M

Ga0243726_1028667

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

1534

Open in IMG/M

Ga0243726_1042021

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia

1060

Open in IMG/M

Ga0243726_1053200

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

844

Open in IMG/M

Ga0243726_1062187

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

727

Open in IMG/M

Ga0243726_1078743

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

578

Open in IMG/M

Ga0243726_1086471

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

525

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0243726_1000182	Ga0243726_10001821	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTIRRIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0243726_1003192	Ga0243726_10031922	F067720	MASTTYRHPGDVTGMFATQEQFRNITKMVCARLRGFTKTYQFAVLGNMVRNAGQLPQPFWLGAACGGGSCSAARCAART
Ga0243726_1012055	Ga0243726_10120555	F032286	MVKWVCQIVTPVRHRALIFDARLFAGNAADDALVTYGTFRFCRLMCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRRKAGI
Ga0243726_1013957	Ga0243726_10139575	F059106	LLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243726_1021365	Ga0243726_10213651	F078004	FYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
Ga0243726_1025598	Ga0243726_10255982	F101193	MARKCTEYHYFKHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0243726_1028667	Ga0243726_10286671	F056309	RRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243726_1042021	Ga0243726_10420212	F081453	MSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0243726_1053200	Ga0243726_10532001	F026489	VVAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243726_1062187	Ga0243726_10621871	F039198	MKLTIAEIQGTKYVQIYLTEEELQKKETKDLVKKYRQEKYSVAIFVSGKENYPEILEKIITKQVELNKNVC
Ga0243726_1078743	Ga0243726_10787431	F042910	ELAPTVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIATRHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAEGKISFQGLTLAPGAAVRIHHDAGVFAAEMVSDDSTVSI
Ga0243726_1086471	Ga0243726_10864712	F062845	TEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACT

Scaffold ID

Protein ID

Family

Sequence

Ga0243726_1000182

Ga0243726_10001821

F044555

MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTIRRIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR

Ga0243726_1003192

Ga0243726_10031922

F067720

MASTTYRHPGDVTGMFATQEQFRNITKMVCARLRGFTKTYQFAVLGNMVRNAGQLPQPFWLGAACGGGSCSAARCAART

Ga0243726_1012055

Ga0243726_10120555

F032286

MVKWVCQIVTPVRHRALIFDARLFAGNAADDALVTYGTFRFCRLMCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRRKAGI

Ga0243726_1013957

Ga0243726_10139575

F059106

LLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV

Ga0243726_1021365

Ga0243726_10213651

F078004

FYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF

Ga0243726_1025598

Ga0243726_10255982

F101193

MARKCTEYHYFKHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH

Ga0243726_1028667

Ga0243726_10286671

F056309

RRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD

Ga0243726_1042021

Ga0243726_10420212

F081453

MSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ

Ga0243726_1053200

Ga0243726_10532001

F026489

VVAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF

Ga0243726_1062187

Ga0243726_10621871

F039198

MKLTIAEIQGTKYVQIYLTEEELQKKETKDLVKKYRQEKYSVAIFVSGKENYPEILEKIITKQVELNKNVC

Ga0243726_1078743

Ga0243726_10787431

F042910

ELAPTVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIATRHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAEGKISFQGLTLAPGAAVRIHHDAGVFAAEMVSDDSTVSI

Ga0243726_1086471

Ga0243726_10864712

F062845

TEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029342: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_27_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences