Sample 3300029340

3300029340: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1

Overview

Basic Information
IMG/M Taxon OID	3300029340 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0282888 \| Ga0243727
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	227305269
Sequencing Scaffolds	29
Novel Protein Genes	33
Associated Families	24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. 4_3_54A2FAA	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F036964	Metagenome / Metatranscriptome	169	Y
F039198	Metagenome	164	Y
F047125	Metagenome / Metatranscriptome	150	N
F050793	Metagenome	145	N
F051934	Metagenome	143	N
F051935	Metagenome	143	N
F058154	Metagenome	135	N
F059982	Metagenome	133	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F068856	Metagenome	124	N
F072366	Metagenome	121	N
F078003	Metagenome	117	N
F081453	Metagenome	114	N
F084124	Metagenome	112	Y
F089053	Metagenome	109	Y
F094005	Metagenome / Metatranscriptome	106	N
F101191	Metagenome	102	N
F101193	Metagenome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243727_1000035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	170871	Open in IMG/M
Ga0243727_1000054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	133863	Open in IMG/M
Ga0243727_1000173	Not Available	76356	Open in IMG/M
Ga0243727_1000249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. 4_3_54A2FAA	58964	Open in IMG/M
Ga0243727_1000391	Not Available	43334	Open in IMG/M
Ga0243727_1002306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. 4_3_54A2FAA	11708	Open in IMG/M
Ga0243727_1003527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8114	Open in IMG/M
Ga0243727_1004081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7114	Open in IMG/M
Ga0243727_1004774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6193	Open in IMG/M
Ga0243727_1006443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	4811	Open in IMG/M
Ga0243727_1009511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3394	Open in IMG/M
Ga0243727_1009977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3255	Open in IMG/M
Ga0243727_1012114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2769	Open in IMG/M
Ga0243727_1015671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2224	Open in IMG/M
Ga0243727_1016031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2182	Open in IMG/M
Ga0243727_1016089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2175	Open in IMG/M
Ga0243727_1025938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1445	Open in IMG/M
Ga0243727_1028943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1315	Open in IMG/M
Ga0243727_1032869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1176	Open in IMG/M
Ga0243727_1035171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1106	Open in IMG/M
Ga0243727_1040082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	984	Open in IMG/M
Ga0243727_1041589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	952	Open in IMG/M
Ga0243727_1043004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	924	Open in IMG/M
Ga0243727_1046310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	865	Open in IMG/M
Ga0243727_1052388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	777	Open in IMG/M
Ga0243727_1052623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	774	Open in IMG/M
Ga0243727_1065122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	636	Open in IMG/M
Ga0243727_1070022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	596	Open in IMG/M
Ga0243727_1083366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243727_1000035	Ga0243727_1000035151	F084124	VFGGLNKQAKAFARATKENKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0243727_1000035	Ga0243727_100003595	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFVPKKLLYRKILWALPKPAIFEKIE
Ga0243727_1000054	Ga0243727_100005455	F084124	VWEKPTNTFRLRNLTIAKQVKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSLSTQTAWLFATEELLYRKILWALPKPAIFEKIE
Ga0243727_1000173	Ga0243727_100017328	F064817	MNIKNLFNRFRKRELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0243727_1000173	Ga0243727_100017330	F105375	MKNNEIFQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAMYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0243727_1000173	Ga0243727_100017342	F032312	MARIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVVLMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0243727_1000173	Ga0243727_100017343	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDNETLEKVITLDKKLKKLIEKLNE
Ga0243727_1000249	Ga0243727_100024945	F036964	LEILKIIFPALMVIGALGSLVVNIVSKGEYAMSIQWLGAALLYTALMLRNNQ
Ga0243727_1000391	Ga0243727_10003916	F067720	MASTTYEHFVDANKMYATQEQFRHATKMVCARLRGFTKTYQFAVLGNMVRNAGQLPQPFWLGAACGGGSCSAARCAART
Ga0243727_1002306	Ga0243727_100230619	F036964	LDILKILFPALMVVGALGSLIVNLIDKGEHAISIQWLGATLLYTALMMRNIK
Ga0243727_1003527	Ga0243727_10035273	F089053	LCRAKRVLFGFGSRNGCVVGGCRLIKGCIRKWIYESANGQQELSTAEEVNVKNMEVFL
Ga0243727_1004081	Ga0243727_10040812	F039198	MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEVLKKIVMKQVELNRNVC
Ga0243727_1004774	Ga0243727_10047746	F039198	MQITNTEMQSKKYVQIYLTEEELQKKETKDLVKKYKQEKYSVATFVSGKENYPEILEKIITKQVELNKNVC
Ga0243727_1006443	Ga0243727_10064433	F081453	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGAPGSKCIQ
Ga0243727_1009511	Ga0243727_10095112	F026489	LTPKENQKSASDFDVLEPQKRGYSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0243727_1009977	Ga0243727_10099772	F026489	LFLRGKFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0243727_1012114	Ga0243727_10121142	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRCGWWS
Ga0243727_1015671	Ga0243727_10156713	F068856	MKRLTSILLALLMLVGMALTEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPVPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGEHQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLNDVPDNPTTMFLLVPMEKE
Ga0243727_1016031	Ga0243727_10160312	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHCAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLR
Ga0243727_1016089	Ga0243727_10160893	F026489	LLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRAPPEKTEDSRLFGVKIF
Ga0243727_1025938	Ga0243727_10259382	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKRRAPPEKTEDSRLFGVKIF
Ga0243727_1028943	Ga0243727_10289431	F058154	ERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMMCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVKVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0243727_1032869	Ga0243727_10328691	F051934	IDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQEIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEKTVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTL
Ga0243727_1035171	Ga0243727_10351711	F072366	MLDILAIKADVYQLERQGKRLPGYRYLREVWQKEAPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN
Ga0243727_1040082	Ga0243727_10400822	F059982	MRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDAAATASPEA
Ga0243727_1041589	Ga0243727_10415891	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGR
Ga0243727_1043004	Ga0243727_10430042	F062845	MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACT
Ga0243727_1046310	Ga0243727_10463103	F032286	MVKWVCQIVTPVRHRALIFDARLFAGNAADDALVTYGTFRFCRLMCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIA
Ga0243727_1052388	Ga0243727_10523881	F081453	EMSPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCVQ
Ga0243727_1052623	Ga0243727_10526231	F051935	ILTFLLAAALLLTSLSCALADGTSPIVSDGLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFGTISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAI
Ga0243727_1065122	Ga0243727_10651223	F026489	SASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243727_1070022	Ga0243727_10700221	F101193	HCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0243727_1083366	Ga0243727_10833661	F050793	ENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALYQQESTETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLIDVREYASQEGYEPMDVDFEQMTDEEFQQFLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029340: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences