| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029339 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133095 | Gp0281939 | Ga0242823 |
| Sample Name | Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_2_stool_1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 249548581 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 28 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 5 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium TF06-43 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026489 | Metagenome | 197 | N |
| F029444 | Metagenome | 188 | Y |
| F032286 | Metagenome / Metatranscriptome | 180 | Y |
| F044554 | Metagenome | 154 | N |
| F047125 | Metagenome / Metatranscriptome | 150 | N |
| F047126 | Metagenome | 150 | N |
| F055715 | Metagenome | 138 | N |
| F055775 | Metagenome | 138 | N |
| F056309 | Metagenome | 137 | N |
| F056682 | Metagenome | 137 | Y |
| F062845 | Metagenome | 130 | N |
| F067845 | Metagenome | 125 | N |
| F070093 | Metagenome | 123 | N |
| F071325 | Metagenome | 122 | N |
| F076190 | Metagenome | 118 | Y |
| F081453 | Metagenome | 114 | N |
| F087334 | Metagenome | 110 | N |
| F090513 | Metagenome | 108 | N |
| F090514 | Metagenome | 108 | N |
| F092227 | Metagenome | 107 | N |
| F105374 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0242823_1000495 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 65678 | Open in IMG/M |
| Ga0242823_1000522 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 62870 | Open in IMG/M |
| Ga0242823_1000731 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 49338 | Open in IMG/M |
| Ga0242823_1000802 | Not Available | 45845 | Open in IMG/M |
| Ga0242823_1000890 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 41889 | Open in IMG/M |
| Ga0242823_1000959 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 39262 | Open in IMG/M |
| Ga0242823_1001116 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 33784 | Open in IMG/M |
| Ga0242823_1001551 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 23653 | Open in IMG/M |
| Ga0242823_1001834 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 20115 | Open in IMG/M |
| Ga0242823_1002538 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 14183 | Open in IMG/M |
| Ga0242823_1003120 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 11091 | Open in IMG/M |
| Ga0242823_1003298 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 10429 | Open in IMG/M |
| Ga0242823_1003304 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 10411 | Open in IMG/M |
| Ga0242823_1004375 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 7289 | Open in IMG/M |
| Ga0242823_1006443 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4714 | Open in IMG/M |
| Ga0242823_1006463 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 4693 | Open in IMG/M |
| Ga0242823_1006492 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4669 | Open in IMG/M |
| Ga0242823_1007145 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4193 | Open in IMG/M |
| Ga0242823_1007248 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4138 | Open in IMG/M |
| Ga0242823_1007460 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4017 | Open in IMG/M |
| Ga0242823_1007980 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3753 | Open in IMG/M |
| Ga0242823_1009007 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 3296 | Open in IMG/M |
| Ga0242823_1012338 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2411 | Open in IMG/M |
| Ga0242823_1014674 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium TF06-43 | 2039 | Open in IMG/M |
| Ga0242823_1015137 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1982 | Open in IMG/M |
| Ga0242823_1021412 | Not Available | 1431 | Open in IMG/M |
| Ga0242823_1032356 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 972 | Open in IMG/M |
| Ga0242823_1050489 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 631 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0242823_1000495 | Ga0242823_100049567 | F081453 | MSPFFLLAGDNIIEKHISANPVCGTNIRASELAVKGAPGRKCVQ |
| Ga0242823_1000522 | Ga0242823_10005221 | F056309 | LSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKDREAVSPLIN |
| Ga0242823_1000731 | Ga0242823_100073123 | F056309 | MWNAVRSTVKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIASFKD |
| Ga0242823_1000802 | Ga0242823_10008026 | F055775 | MAQIAQQDNLVIEVTTTAAALDDATKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN |
| Ga0242823_1000890 | Ga0242823_100089038 | F092227 | MNDKKRKRILRVGCLILAFVFGLSLLGSLVMMLLV |
| Ga0242823_1000959 | Ga0242823_10009591 | F056309 | RTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALFIVSFKD |
| Ga0242823_1001116 | Ga0242823_100111636 | F067845 | MKHWKNLLVCLLAGVLALGMLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR |
| Ga0242823_1001551 | Ga0242823_10015511 | F056309 | TPSLSVVPLLLGASDSLSVSYGMEPEQEALSIVSFKD |
| Ga0242823_1001834 | Ga0242823_100183420 | F071325 | IVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFRPHAVRFPAAFLLVHRFYLAFEELLSCATAYL |
| Ga0242823_1002538 | Ga0242823_10025387 | F047126 | VYLKTKKMTNISQTQAGFKSKSLGSFCRFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPLPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC |
| Ga0242823_1003120 | Ga0242823_100312011 | F087334 | ASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ |
| Ga0242823_1003298 | Ga0242823_10032987 | F090514 | MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASNIF |
| Ga0242823_1003304 | Ga0242823_10033043 | F047125 | MDVVLLLMVLGVMLSGFWVADALDHIRKEIIRQEGKRRGWWS |
| Ga0242823_1004375 | Ga0242823_10043751 | F070093 | VSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPK |
| Ga0242823_1006443 | Ga0242823_10064431 | F047125 | MDVVLLLMVLGVMLSGFRAADALDHLRKEIIRQEGKRRGWWS |
| Ga0242823_1006463 | Ga0242823_10064635 | F090513 | MAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFT |
| Ga0242823_1006492 | Ga0242823_10064921 | F026489 | LTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLF |
| Ga0242823_1007145 | Ga0242823_10071453 | F062845 | MEKTPFILHEEFRSDNNEQRKEHFQKKFERYIVDELSNTAPSKSCA |
| Ga0242823_1007248 | Ga0242823_10072486 | F032286 | MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNG |
| Ga0242823_1007460 | Ga0242823_10074601 | F076190 | GSITISVKNVFTAASRVSERVWPLVHITVPNGLKSVKIRVEKPQNNSLYPYFQREPL |
| Ga0242823_1007980 | Ga0242823_10079802 | F062845 | MEKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDELSNTVPSKSCA |
| Ga0242823_1009007 | Ga0242823_10090072 | F044554 | VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL |
| Ga0242823_1012338 | Ga0242823_10123386 | F029444 | MEVSGQLTGFELEDLKFWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF |
| Ga0242823_1014674 | Ga0242823_10146744 | F056682 | MQSRAGKVANQSIRQGEMYPASFREFPSKNHGTFSFQELGKIHENQEVL |
| Ga0242823_1015137 | Ga0242823_10151371 | F070093 | VSNFESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLSELNPKSN |
| Ga0242823_1021412 | Ga0242823_10214121 | F076190 | VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRV |
| Ga0242823_1032356 | Ga0242823_10323561 | F105374 | MKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKED |
| Ga0242823_1050489 | Ga0242823_10504892 | F055715 | MNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |